- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x CMO: CARBON MONOXIDE(Non-functional Binders)
CMO.1: 4 residues within 4Å:- Chain A: H.60, V.64, H.89
- Ligands: HEM.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.60
CMO.3: 4 residues within 4Å:- Chain B: F.42, H.63, V.67
- Ligands: HEM.4
No protein-ligand interaction detected (PLIP)CMO.5: 5 residues within 4Å:- Chain C: F.44, H.60, V.64, H.89
- Ligands: HEM.6
No protein-ligand interaction detected (PLIP)CMO.7: 6 residues within 4Å:- Chain D: L.28, H.63, V.67, H.92, L.106
- Ligands: HEM.8
No protein-ligand interaction detected (PLIP)- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.2: 19 residues within 4Å:- Chain A: M.33, Y.43, F.44, H.46, W.47, H.60, T.63, V.64, I.68, L.85, Q.88, H.89, L.93, V.95, N.99, F.100, L.103, L.138
- Ligands: CMO.1
16 PLIP interactions:15 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.43, A:Y.43, A:F.44, A:F.44, A:W.47, A:T.63, A:I.68, A:L.85, A:L.93, A:V.95, A:L.103, A:L.138
- Hydrogen bonds: A:Q.88
- Salt bridges: A:H.46
- Metal complexes: A:H.89, CMO.1
HEM.4: 18 residues within 4Å:- Chain B: T.38, H.41, F.42, F.45, H.63, K.66, V.67, L.71, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141
- Ligands: CMO.3
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:T.38, B:F.42, B:F.42, B:V.67, B:V.67, B:L.71, B:L.88, B:L.91, B:L.96, B:V.98, B:N.102, B:F.103, B:F.103, B:L.106, B:L.141
- Metal complexes: B:H.92
HEM.6: 19 residues within 4Å:- Chain C: M.33, T.40, Y.43, F.44, H.46, W.47, H.60, T.63, I.68, L.85, Q.88, H.89, L.93, V.95, N.99, F.100, L.103, L.138
- Ligands: CMO.5
17 PLIP interactions:16 interactions with chain C, 1 Ligand-Ligand interactions- Hydrophobic interactions: C:Y.43, C:Y.43, C:F.44, C:F.44, C:W.47, C:T.63, C:I.68, C:L.85, C:L.93, C:V.95, C:L.103, C:L.138
- Hydrogen bonds: C:Q.88
- Salt bridges: C:H.46, C:H.60
- Metal complexes: C:H.89, CMO.5
HEM.8: 18 residues within 4Å:- Chain D: T.38, H.41, F.42, H.63, K.66, G.70, L.71, L.88, L.91, H.92, K.95, L.96, V.98, N.102, F.103, L.106, L.141
- Ligands: CMO.7
17 PLIP interactions:17 interactions with chain D,- Hydrophobic interactions: D:T.38, D:F.42, D:F.42, D:K.66, D:L.71, D:L.88, D:L.88, D:L.96, D:V.98, D:N.102, D:F.103, D:L.141
- Water bridges: D:K.66
- Salt bridges: D:K.66, D:K.95
- pi-Stacking: D:H.63
- Metal complexes: D:H.92
- 1 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 6 residues within 4Å:- Chain A: T.42
- Chain D: R.40, H.41, K.95, L.96, H.97
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:R.40, D:H.41, D:H.97, A:T.42
- Water bridges: D:R.40, D:H.41
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Coppola, D. et al., ATP regulation of the ligand-binding properties in temperate and cold-adapted haemoglobins. X-ray structure and ligand-binding kinetics in the sub-Antarctic fish Eleginops maclovinus. Mol Biosyst (2012)
- Release Date
- 2012-11-07
- Peptides
- Hemoglobin alpha chain: AC
Hemoglobin beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Coppola, D. et al., ATP regulation of the ligand-binding properties in temperate and cold-adapted haemoglobins. X-ray structure and ligand-binding kinetics in the sub-Antarctic fish Eleginops maclovinus. Mol Biosyst (2012)
- Release Date
- 2012-11-07
- Peptides
- Hemoglobin alpha chain: AC
Hemoglobin beta chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
D