SMTL ID : 4etp.1

C-terminal motor and motor homology domain of Kar3Vik1 fused to a synthetic heterodimeric coiled coil

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: R.66, R.68, P.69, L.71, Q.149, T.150, G.151, S.152, G.153, K.154, T.155, F.156 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:R.66, A:G.151, A:S.152, A:G.153, A:K.154, A:T.155, A:F.156 Water bridges: A:R.66, A:R.66, A:R.66, A:T.150, A:K.154, A:T.155, A:T.155, A:D.300 Salt bridges: A:K.154 pi-Stacking: A:F.156, A:F.156

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.155 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.155, H2O.2, H2O.2, H2O.2, H2O.3

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: T.79, I.82, V.84, D.117, Q.118 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.79, A:T.79, A:V.84, A:Q.118 Water bridges: A:I.82, A:V.84 GOL.4: 7 residues within 4Å: Chain A: T.232, T.233, I.278, H.280, T.295, L.357 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.357 Water bridges: A:I.234 GOL.5: 9 residues within 4Å: Chain A: N.141, K.230, T.231, T.232, T.295, Y.360, S.361 Ligands: GOL.4, GOL.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.141, A:T.232, A:T.232 Water bridges: A:N.141, A:T.295, A:Y.360 GOL.6: 7 residues within 4Å: Chain A: N.141, T.229, K.230, Y.360, T.363, S.366 Ligands: GOL.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.141, A:T.229, A:T.363, A:T.363 Water bridges: A:D.365, A:S.366, A:S.366 GOL.7: 4 residues within 4Å: Chain A: R.58, K.127, E.128, Q.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.58, A:K.127, A:Q.131 Water bridges: A:R.58 GOL.9: 2 residues within 4Å: Chain B: N.265, K.267 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.265

1 x EBC: N,N'-ethane-1,2-diylbis(2-iodoacetamide)(Covalent)

EBC.8: 4 residues within 4Å: Chain B: Y.37, C.41, C.109, Q.113 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.37 Hydrogen bonds: B:Y.37, B:Y.37 Water bridges: B:D.108, B:T.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rank, K.C. et al., Kar3Vik1, a member of the kinesin-14 superfamily, shows a novel kinesin microtubule binding pattern. J.Cell Biol. (2012)

Release Date

2012-06-27

Peptides

Kinesin-like protein KAR3: A
Spindle pole body-associated protein VIK1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Kinesin-like protein KAR3

Spindle pole body-associated protein VIK1