SMTL ID : 4euc.1

Succinyl-CoA:acetate CoA-transferase (AarCH6-E294A) in complex with dethiaacetyl-CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-dimer

Ligands

2 x 0RQ: [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(4-oxidanylidenepentylamino)propyl]amino]butyl] hydrogen phosphate(Non-covalent)

0RQ.1: 26 residues within 4Å: Chain A: F.92, L.114, Q.267, G.269, V.270, G.271, N.272, V.273, A.294, V.295, N.361, G.362, M.363, I.364, S.374, V.377, M.383, N.384, G.385, I.386, G.387, G.388, S.389, A.407, K.408, I.412 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:F.92, A:L.114, A:V.270, A:V.270, A:A.294, A:V.295 Hydrogen bonds: A:V.270, A:N.272, A:N.272, A:V.273, A:I.364, A:N.384, A:G.388, A:S.389, A:K.408 Water bridges: A:A.274, A:G.362, A:G.362, A:G.362, A:G.385, A:S.389, A:S.389 Salt bridges: A:K.408 0RQ.6: 26 residues within 4Å: Chain B: F.92, L.114, Q.267, G.269, V.270, G.271, N.272, V.273, A.294, V.295, N.361, G.362, M.363, I.364, S.374, V.377, M.383, N.384, G.385, I.386, G.387, G.388, S.389, A.407, K.408, I.412 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:F.92, B:V.270, B:V.270, B:A.294, B:V.295 Hydrogen bonds: B:V.270, B:N.272, B:N.272, B:V.273, B:I.364, B:N.384, B:G.388, B:S.389, B:K.408 Water bridges: B:V.270, B:G.362, B:G.385, B:S.389, B:S.389 Salt bridges: B:K.408

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: N.112, R.120, N.125 Chain B: G.443 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: I.195, V.196, R.354 Chain B: R.354 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: G.443 Chain B: N.112, R.120, N.125 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.354 Chain B: V.196, R.354 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mullins, E.A. et al., Crystal Structures of Acetobacter aceti Succinyl-Coenzyme A (CoA):Acetate CoA-Transferase Reveal Specificity Determinants and Illustrate the Mechanism Used by Class I CoA-Transferases. Biochemistry (2012)

Release Date

2012-10-10

Peptides

Succinyl-CoA:acetate coenzyme A transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Succinyl-CoA:acetate coenzyme A transferase

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