SMTL ID : 4euv.1

Crystal Structure of PelD 158-CT from Pseudomonas aeruginosa PAO1, in complex with c-di-GMP, form 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)

C2E.1: 9 residues within 4Å: Chain A: R.4, R.210, D.213, L.231, T.234, G.238, G.241, Y.242, R.245 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.4, A:R.210, A:T.234, A:R.245 Water bridges: A:R.210, A:R.210, A:R.210, A:R.210, A:T.234 Salt bridges: A:R.4, A:R.210, A:D.213 pi-Cation interactions: A:R.210, A:R.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Structures of the PelD Cyclic Diguanylate Effector Involved in Pellicle Formation in Pseudomonas aeruginosa PAO1. J.Biol.Chem. (2012)

Release Date

2012-07-25

Peptides

PelD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PelD