SMTL ID : 4evu.1 (1 other biounit)

Crystal structure of C-terminal domain of putative periplasmic protein ydgH from S. enterica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.55 Chain B: R.60, G.61 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Water bridges: B:G.61, A:K.11, A:R.55, A:R.55 Salt bridges: A:R.55 SO4.3: 3 residues within 4Å: Chain B: R.60, N.62, N.63 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.62, B:N.63, B:N.63 Water bridges: B:R.60, B:R.60 Salt bridges: B:R.60

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain B: N.10, K.11, A.12 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eletsky, A. et al., Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO. Plos One (2014)

Release Date

2012-05-30

Peptides

Putative periplasmic protein ydgH: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative periplasmic protein ydgH

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