SMTL ID : 4ez7.1

CDK2 in complex with staurosporine and 2 molecules of 8-anilino-1-naphthalene sulfonic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

1 x STU: STAUROSPORINE(Non-covalent)

STU.1: 19 residues within 4Å: Chain A: I.18, G.19, E.20, G.21, V.26, A.39, K.41, V.72, F.88, E.89, F.90, L.91, H.92, D.94, Q.139, N.140, L.142, D.153 Ligands: 2AN.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.18, A:I.18, A:V.26, A:A.39, A:K.41, A:F.90, A:L.142, A:L.142, A:D.153 Hydrogen bonds: A:L.91

2 x 2AN: 8-ANILINO-1-NAPHTHALENE SULFONATE(Non-covalent)

2AN.2: 15 residues within 4Å: Chain A: Y.23, K.41, I.43, L.63, K.64, V.72, L.74, L.86, F.88, A.152, D.153, F.154, L.156 Ligands: STU.1, 2AN.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.23, A:I.43, A:L.63, A:L.63, A:K.64, A:V.72, A:L.74, A:L.86, A:F.88, A:F.88, A:L.156 Hydrogen bonds: A:K.41, A:K.41, A:D.153, A:F.154 Salt bridges: A:K.41 pi-Cation interactions: A:K.41 2AN.3: 8 residues within 4Å: Chain A: L.45, I.60, K.64, V.77, H.79, L.84, L.86 Ligands: 2AN.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.45, A:I.60, A:I.60, A:K.64, A:V.77, A:L.84, A:L.86 Salt bridges: A:K.64, A:H.79

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: L.227, R.253, S.272, L.275, H.276, Y.277 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.253, A:R.253, A:S.272, A:Y.277 EDO.5: 7 residues within 4Å: Chain A: L.66, N.67, H.68, I.71, V.72, K.73, L.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.68, A:H.68 EDO.6: 8 residues within 4Å: Chain A: R.134, D.135, L.136, K.137, T.173, Y.176, R.177, S.196 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.135, A:L.136, A:S.196 Water bridges: A:L.136, A:A.178 EDO.7: 5 residues within 4Å: Chain A: E.36, V.37, V.38, E.89, F.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.36, A:E.36, A:F.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, M.P. et al., A Novel Approach to the Discovery of Small-Molecule Ligands of CDK2. Chembiochem (2012)

Release Date

2012-08-22

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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