SMTL ID : 4f0j.2 (1 other biounit)

Crystal structure of a probable hydrolytic enzyme (PA3053) from Pseudomonas aeruginosa PAO1 at 1.50 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.1: 4 residues within 4Å: Chain A: Y.167, E.212, W.216 Chain B: Q.28 No protein-ligand interaction detected (PLIP) 2PE.16: 4 residues within 4Å: Chain A: Q.28 Chain B: Y.167, E.212, W.216 No protein-ligand interaction detected (PLIP)

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: S.174, A.175, E.176, R.207 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.175, A:E.176 Water bridges: A:R.207, A:R.207 Salt bridges: A:R.207 SO4.3: 10 residues within 4Å: Chain A: G.54, K.55, N.56, F.57, H.121, S.122, M.123, Y.186, H.293 Ligands: EDO.8 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.55, A:N.56, A:N.56, A:F.57, A:S.122, A:Y.186 Salt bridges: A:H.121, A:H.293 SO4.4: 4 residues within 4Å: Chain A: A.299, P.300, E.301, R.302 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.299, A:E.301, A:R.302 SO4.5: 8 residues within 4Å: Chain A: R.161, W.166, R.169, G.254, K.255, D.256, A.257 Ligands: EDO.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.254, A:D.256, A:A.257 Salt bridges: A:R.161, A:R.169 SO4.17: 4 residues within 4Å: Chain B: S.174, A.175, E.176, R.207 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.175, B:E.176 Water bridges: B:R.207, B:R.207 Salt bridges: B:R.207 SO4.18: 10 residues within 4Å: Chain B: G.54, K.55, N.56, F.57, H.121, S.122, M.123, Y.186, H.293 Ligands: EDO.23 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.55, B:N.56, B:N.56, B:F.57, B:S.122, B:Y.186 Salt bridges: B:H.121, B:H.293 SO4.19: 4 residues within 4Å: Chain B: A.299, P.300, E.301, R.302 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.299, B:E.301, B:R.302 SO4.20: 8 residues within 4Å: Chain B: R.161, W.166, R.169, G.254, K.255, D.256, A.257 Ligands: EDO.22 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.254, B:D.256, B:A.257 Salt bridges: B:R.161, B:R.169

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 7 residues within 4Å: Chain A: V.158, P.159, R.161, W.166, F.226, G.254, A.257 Ligand excluded by PLIP EDO.7: 7 residues within 4Å: Chain A: W.166, Y.181, A.252, I.253, G.254, K.255 Ligands: SO4.5 Ligand excluded by PLIP EDO.8: 8 residues within 4Å: Chain A: K.55, N.56, S.122, Y.181, T.251, I.253, H.293 Ligands: SO4.3 Ligand excluded by PLIP EDO.9: 7 residues within 4Å: Chain A: H.53, G.54, F.57, T.61, W.62, H.121, Q.296 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: R.75, L.111 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain A: G.83, F.84, C.85, K.89, M.205, V.214 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: W.160, R.161, S.162, D.165 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: Y.7, G.13, F.14, D.15, R.197 Ligand excluded by PLIP EDO.21: 7 residues within 4Å: Chain B: V.158, P.159, R.161, W.166, F.226, G.254, A.257 Ligand excluded by PLIP EDO.22: 7 residues within 4Å: Chain B: W.166, Y.181, A.252, I.253, G.254, K.255 Ligands: SO4.20 Ligand excluded by PLIP EDO.23: 8 residues within 4Å: Chain B: K.55, N.56, S.122, Y.181, T.251, I.253, H.293 Ligands: SO4.18 Ligand excluded by PLIP EDO.24: 7 residues within 4Å: Chain B: H.53, G.54, F.57, T.61, W.62, H.121, Q.296 Ligand excluded by PLIP EDO.25: 2 residues within 4Å: Chain B: R.75, L.111 Ligand excluded by PLIP EDO.26: 6 residues within 4Å: Chain B: G.83, F.84, C.85, K.89, M.205, V.214 Ligand excluded by PLIP EDO.27: 4 residues within 4Å: Chain B: W.160, R.161, S.162, D.165 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain B: Y.7, G.13, F.14, D.15, R.197 Ligand excluded by PLIP

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 2 residues within 4Å: Chain A: R.236 Chain B: A.155 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain A: K.154, W.160, F.226 Chain B: Q.98, R.130, L.134 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain A: A.155 Chain B: R.236 Ligand excluded by PLIP CL.30: 6 residues within 4Å: Chain A: Q.98, R.130, L.134 Chain B: K.154, W.160, F.226 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a probable hydrolytic enzyme (PA3053) from Pseudomonas aeruginosa PAO1 at 1.50 A resolution. To be published

Release Date

2012-07-04

Peptides

Probable hydrolytic enzyme: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Probable hydrolytic enzyme

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