SMTL ID : 4f0z.1

Crystal Structure of Calcineurin in Complex with the Calcineurin-Inhibiting Domain of the African Swine Fever Virus Protein A238L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: D.287, N.318, N.319, K.320 Chain C: D.19, N.20 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:N.20, C:N.20, A:D.287, A:N.318 GOL.2: 6 residues within 4Å: Chain A: P.27, L.31, I.47, A.50, H.51, K.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.51, A:K.54 GOL.3: 9 residues within 4Å: Chain A: D.92, H.94, D.120, R.256, H.283, E.284, A.285, F.308, Y.313 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.92, A:D.92, A:H.94, A:D.120, A:R.256, A:R.256, A:H.283, A:A.285 Water bridges: A:N.152 GOL.4: 6 residues within 4Å: Chain A: L.238, D.240, E.244, K.245, T.246, E.248 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.240, A:D.240, A:K.245, A:T.246, A:T.246 Water bridges: A:T.246, A:T.246 GOL.9: 10 residues within 4Å: Chain A: P.26, E.55, R.57, E.130, I.170, K.171, W.344 Chain B: K.135, I.138, N.139 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.55, B:N.139, B:N.139 Water bridges: A:G.56, A:E.130 GOL.10: 4 residues within 4Å: Chain B: Y.106, D.143, D.145, R.147 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.145, B:R.147, B:R.147 GOL.11: 4 residues within 4Å: Chain A: T.364 Chain B: F.82, V.84, K.91 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.82, B:K.91 GOL.12: 6 residues within 4Å: Chain A: Y.126, T.163, P.346, N.347 Chain C: K.36, L.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.126

4 x CA: CALCIUM ION(Non-covalent)

CA.5: 7 residues within 4Å: Chain B: D.63, D.65, N.67, E.69, V.70, D.71, E.74 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.63, B:E.69, B:E.74, B:E.74, H2O.14 CA.6: 7 residues within 4Å: Chain B: D.31, D.33, S.35, S.37, L.38, S.39, E.42 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.31, B:S.35, B:S.37, B:E.42, H2O.15 CA.7: 7 residues within 4Å: Chain B: D.100, D.102, D.104, Y.106, I.107, S.108, E.111 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.100, B:D.102, B:D.104, B:Y.106, H2O.14 CA.8: 7 residues within 4Å: Chain B: D.141, D.143, D.145, R.147, I.148, S.149, E.152 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.141, B:D.143, B:D.145, B:R.147, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grigoriu, S. et al., The molecular mechanism of substrate engagement and immunosuppressant inhibition of calcineurin. Plos Biol. (2013)

Release Date

2013-03-06

Peptides

Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform: A
Calcineurin subunit B type 1: B
Ankyrin repeat domain-containing protein A238L: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform

Calcineurin subunit B type 1

Ankyrin repeat domain-containing protein A238L

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