SMTL ID : 4f2g.1 (2 other biounits)

The Crystal Structure of Ornithine carbamoyltransferase from Burkholderia thailandensis E264

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.7, H.8, D.14, F.15 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.7, A:R.7, A:H.8 EDO.9: 4 residues within 4Å: Chain B: R.7, H.8, D.14, F.15 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.7, B:R.7, B:H.8

14 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: S.56, R.58, T.59, R.107, H.134, C.263, L.264, R.291 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.56, A:T.59, A:T.59, A:T.59, A:Q.137 Water bridges: A:L.264, A:L.264 Salt bridges: A:R.58, A:R.107, A:H.134, A:R.291 PO4.3: 2 residues within 4Å: Chain A: R.60, F.76 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.60 PO4.4: 1 residues within 4Å: Chain A: H.73 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.73, A:H.73 Salt bridges: A:H.73 PO4.5: 6 residues within 4Å: Chain A: G.85, R.86, G.87, E.88, P.89 Ligands: PO4.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.87 PO4.6: 6 residues within 4Å: Chain A: G.85, R.86, E.88, P.89, V.90 Ligands: PO4.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.88, A:E.88, A:V.90 Water bridges: A:E.91 PO4.7: 4 residues within 4Å: Chain A: H.148, R.149, L.259, V.283 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.148, A:R.149 PO4.8: 6 residues within 4Å: Chain A: K.33, E.38 Chain B: R.26, I.29, K.33 Ligands: PO4.16 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:N.36, A:N.36 Salt bridges: A:K.33, B:R.26, B:K.33 PO4.10: 8 residues within 4Å: Chain B: S.56, R.58, T.59, R.107, H.134, C.263, L.264, R.291 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.56, B:T.59, B:T.59, B:T.59, B:Q.137 Water bridges: B:L.264, B:L.264 Salt bridges: B:R.58, B:R.107, B:H.134, B:R.291 PO4.11: 2 residues within 4Å: Chain B: R.60, F.76 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.60 PO4.12: 1 residues within 4Å: Chain B: H.73 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.73 PO4.13: 6 residues within 4Å: Chain B: G.85, R.86, G.87, E.88, P.89 Ligands: PO4.14 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.87 PO4.14: 6 residues within 4Å: Chain B: G.85, R.86, E.88, P.89, V.90 Ligands: PO4.13 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.88, B:E.88, B:V.90 PO4.15: 4 residues within 4Å: Chain B: H.148, R.149, L.259, V.283 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.148, B:R.149 PO4.16: 6 residues within 4Å: Chain A: R.26, I.29, K.33 Chain B: K.33, E.38 Ligands: PO4.8 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Salt bridges: A:R.26, A:K.33, B:K.33 Water bridges: B:N.36, B:N.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-05-30

Peptides

Ornithine carbamoyltransferase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ornithine carbamoyltransferase 1

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