SMTL ID : 4f4h.1

Crystal structure of a Glutamine dependent NAD+ synthetase from Burkholderia thailandensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: M.400, N.404, Y.532, K.533 Chain B: N.389, R.393, T.425, L.426 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.389, B:L.426, A:N.404, A:Y.532 Salt bridges: B:R.393, A:K.533 Water bridges: A:Y.532 PO4.2: 8 residues within 4Å: Chain A: N.389, R.393, T.425, L.426 Chain B: M.400, N.404, Y.532, K.533 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.389, A:L.426, B:N.404, B:N.404, B:Y.532 Salt bridges: A:R.393, B:K.533

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain B: N.15, T.17, K.27, E.256, K.297 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.17, B:T.17, B:K.27 Water bridges: B:R.559 EDO.4: 6 residues within 4Å: Chain B: A.303, E.327, R.328, V.329, R.330, S.408 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.303, B:A.303, B:S.408

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.5: 2 residues within 4Å: Chain B: E.280, R.447 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.280, B:R.447 NO3.6: 4 residues within 4Å: Chain B: R.353, Q.460, P.461, D.462 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.460, B:D.462 Water bridges: B:D.462

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-08-08

Peptides

Glutamine dependent NAD+ synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamine dependent NAD+ synthetase