- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.09 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 4 x HEC: HEME C(Covalent)
HEC.2: 25 residues within 4Å:- Chain A: Q.29, S.30, C.31, C.34, H.35, S.54, V.55, R.65, N.66, T.67, P.68, L.70, Q.91, F.92, W.93, R.96, L.100, Q.103, A.104, P.107, M.108, E.113, M.114, Q.163, K.265
17 PLIP interactions:17 interactions with chain A,- Hydrophobic interactions: A:T.67, A:L.70, A:Q.91, A:L.100, A:Q.103, A:P.107, A:P.107, A:E.113
- Hydrogen bonds: A:Q.91, A:F.92, A:W.93
- Water bridges: A:K.265, A:K.265
- Salt bridges: A:R.65, A:R.96, A:K.265
- Metal complexes: A:H.35
HEC.3: 22 residues within 4Å:- Chain A: W.93, N.200, C.201, C.204, H.205, H.224, I.226, L.228, F.264, V.266, P.267, L.269, V.272, Y.278, M.279, H.280, L.287, A.290, Y.294, S.324, E.327, L.334
19 PLIP interactions:19 interactions with chain A,- Hydrophobic interactions: A:H.224, A:I.226, A:I.226, A:L.228, A:P.267, A:L.287, A:A.290, A:Y.294, A:E.327, A:L.334
- Hydrogen bonds: A:M.279, A:H.280
- Water bridges: A:G.262, A:S.268, A:T.275, A:T.275
- Salt bridges: A:H.280
- Metal complexes: A:H.205, A:Y.294
HEC.9: 26 residues within 4Å:- Chain B: Q.29, S.30, C.31, C.34, H.35, S.54, V.55, R.65, N.66, T.67, P.68, L.70, Q.91, F.92, W.93, R.96, L.100, Q.103, A.104, P.107, M.108, E.113, M.114, L.159, Q.163, K.265
21 PLIP interactions:20 interactions with chain B, 1 Ligand-Water interactions,- Hydrophobic interactions: B:Q.29, B:T.67, B:L.70, B:Q.91, B:L.100, B:Q.103, B:P.107, B:E.113, B:L.159
- Hydrogen bonds: B:Q.91, B:F.92, B:W.93
- Water bridges: B:K.265, B:K.265, B:K.265, B:K.265
- Salt bridges: B:R.65, B:R.96, B:K.265
- Metal complexes: B:H.35, H2O.7
HEC.10: 22 residues within 4Å:- Chain B: W.93, N.200, C.201, C.204, H.205, H.224, I.226, L.228, F.264, V.266, P.267, L.269, V.272, Y.278, M.279, H.280, L.287, A.290, Y.294, S.324, E.327, L.334
18 PLIP interactions:18 interactions with chain B,- Hydrophobic interactions: B:H.224, B:I.226, B:I.226, B:L.228, B:P.267, B:L.269, B:Y.278, B:L.287, B:A.290, B:Y.294, B:E.327, B:L.334
- Hydrogen bonds: B:M.279, B:H.280
- Water bridges: B:I.226
- Salt bridges: B:H.280
- Metal complexes: B:H.205, B:Y.294
- 5 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 2 residues within 4Å:- Chain A: A.138, G.141
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.138
ACT.7: 3 residues within 4Å:- Chain A: Y.297, T.298, S.299
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.298
ACT.11: 3 residues within 4Å:- Chain B: A.138, L.139, G.141
No protein-ligand interaction detected (PLIP)ACT.15: 3 residues within 4Å:- Chain D: R.34, L.36, E.37
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.37
- Salt bridges: D:R.34
ACT.16: 3 residues within 4Å:- Chain F: R.34, L.36, E.37
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:E.37, F:E.37
- Salt bridges: F:R.34
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.5: 2 residues within 4Å:- Chain A: N.231, T.233
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.231, A:N.231, A:T.233
NA.6: 4 residues within 4Å:- Chain A: L.250, A.251, R.252, I.255
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.255, A:I.255
NA.13: 4 residues within 4Å:- Chain B: L.250, A.251, R.252, I.255
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.251, B:I.255
NA.14: 2 residues within 4Å:- Chain B: N.231, T.233
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.231, B:T.233, B:T.233
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yukl, E.T. et al., Diradical intermediate within the context of tryptophan tryptophylquinone biosynthesis. Proc.Natl.Acad.Sci.USA (2013)
- Release Date
- 2013-03-06
- Peptides
- Methylamine utilization protein MauG: AB
Methylamine dehydrogenase light chain: CE
Methylamine dehydrogenase heavy chain: DF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CE
ED
DF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.09 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 4 x HEC: HEME C(Covalent)
- 5 x ACT: ACETATE ION(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yukl, E.T. et al., Diradical intermediate within the context of tryptophan tryptophylquinone biosynthesis. Proc.Natl.Acad.Sci.USA (2013)
- Release Date
- 2013-03-06
- Peptides
- Methylamine utilization protein MauG: AB
Methylamine dehydrogenase light chain: CE
Methylamine dehydrogenase heavy chain: DF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CE
ED
DF
F