SMTL ID : 4faf.1

Substrate CA/p2 in Complex with a Human Immunodeficiency Virus Type 1 Protease Variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x ARG- VAL- LEU- PHE- GLU- ALA- MET: substrate CA/p2 peptide(Non-covalent)

ARG-VAL-LEU-PHE-GLU-ALA-MET.1: 26 residues within 4Å: Chain A: R.8, L.23, N.25, G.27, A.28, D.29, I.47, G.48, G.49, T.82 Chain B: R.8, N.25, G.27, A.28, D.29, D.30, K.45, I.47, G.48, G.49, I.50, Q.58, L.76, P.81, T.82, V.84 27 PLIP interactions: 9 interactions with chain A, 18 interactions with chain B Hydrophobic interactions: A:L.23, A:I.47, A:T.82, B:A.28, B:I.47, B:I.47, B:I.50, B:T.82, B:V.84 Hydrogen bonds: A:N.25, A:G.27, A:D.29, A:G.48, B:N.25, B:G.27, B:D.29, B:D.29, B:D.29, B:D.30, B:G.48, B:G.48 Water bridges: A:G.48, A:I.50, B:R.8, B:D.30, B:D.30, B:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Higher Desolvation Energy Reduces Molecular Recognition in Multi-Drug Resistant HIV-1 Protease. Biology (Basel) (2012)

Release Date

2012-08-29

Peptides

HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 protease

Related Entries With Identical Sequence