SMTL ID : 4fav.1

Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: N.66, T.275, P.277 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.275, A:P.277, H2O.1, H2O.3, H2O.3 CA.4: 3 residues within 4Å: Chain B: N.66, T.275, P.277 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:P.277, H2O.4, H2O.5, H2O.5, H2O.8

4 x HEC: HEME C(Covalent)

HEC.2: 24 residues within 4Å: Chain A: Q.29, S.30, C.31, C.34, H.35, S.54, V.55, R.65, T.67, P.68, L.70, Q.91, F.92, W.93, R.96, L.100, Q.103, A.104, P.107, M.108, E.113, M.114, Q.163, K.265 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:Q.29, A:R.65, A:T.67, A:L.70, A:F.92, A:L.100, A:Q.103, A:P.107, A:P.107, A:E.113 Hydrogen bonds: A:Q.91, A:F.92, A:F.92, A:W.93 Water bridges: A:K.265 Salt bridges: A:R.65, A:R.96, A:K.265 Metal complexes: A:H.35 HEC.3: 22 residues within 4Å: Chain A: W.93, N.200, C.201, C.204, H.205, H.224, I.226, L.228, F.264, K.265, V.266, P.267, L.269, V.272, Y.278, M.279, H.280, L.287, Y.294, S.324, E.327, L.334 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:W.93, A:N.200, A:H.224, A:I.226, A:L.228, A:V.266, A:P.267, A:L.269, A:L.287, A:Y.294, A:E.327, A:L.334 Hydrogen bonds: A:M.279, A:H.280 Water bridges: A:I.226, A:G.262, A:R.270, A:T.275 Salt bridges: A:H.280 Metal complexes: A:H.205, A:Y.294 HEC.5: 25 residues within 4Å: Chain B: Q.29, S.30, C.31, C.34, H.35, S.54, V.55, R.65, N.66, T.67, P.68, L.70, Q.91, F.92, W.93, R.96, L.100, Q.103, A.104, P.107, E.113, M.114, L.159, Q.163, K.265 22 PLIP interactions: 21 interactions with chain B, 1 Ligand-Water interactions Hydrophobic interactions: B:Q.29, B:T.67, B:L.70, B:L.100, B:Q.103, B:P.107, B:P.107, B:E.113, B:L.159 Hydrogen bonds: B:Q.91, B:F.92, B:W.93 Water bridges: B:R.96, B:K.265, B:K.265, B:K.265, B:K.265 Salt bridges: B:R.65, B:R.96, B:K.265 Metal complexes: B:H.35, H2O.10 HEC.6: 22 residues within 4Å: Chain B: W.93, N.200, C.201, C.204, H.205, H.224, I.226, L.228, F.264, V.266, P.267, V.272, Y.278, M.279, H.280, L.287, A.290, I.291, Y.294, S.324, E.327, L.334 22 PLIP interactions: 22 interactions with chain B, Hydrophobic interactions: B:W.93, B:H.224, B:I.226, B:I.226, B:L.228, B:P.267, B:Y.278, B:L.287, B:A.290, B:I.291, B:Y.294, B:Y.294, B:E.327, B:L.334 Hydrogen bonds: B:M.279, B:H.280 Water bridges: B:I.226, B:G.262, B:G.262 Salt bridges: B:H.280 Metal complexes: B:H.205, B:Y.294

2 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain B: L.250, A.251, R.252, I.255 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.250, B:I.255 NA.8: 2 residues within 4Å: Chain B: N.231, T.233 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.231, B:N.231, B:T.233

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 3 residues within 4Å: Chain B: A.74, A.164, R.215 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.74, B:A.164, B:R.215, B:R.215

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.10: 3 residues within 4Å: Chain D: R.34, L.36, E.37 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.37 Salt bridges: D:R.34, D:E.37 MES.11: 3 residues within 4Å: Chain F: R.34, L.36, E.37 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.37 Salt bridges: F:R.34, F:E.37

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.12: 5 residues within 4Å: Chain F: T.186, Q.234, K.235, S.254, G.256 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yukl, E.T. et al., Diradical intermediate within the context of tryptophan tryptophylquinone biosynthesis. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-06

Peptides

Methylamine utilization protein MauG: AB
Methylamine dehydrogenase light chain: CE
Methylamine dehydrogenase heavy chain: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E
E

D
D

F
F

Methylamine utilization protein MauG

Methylamine dehydrogenase light chain

Methylamine dehydrogenase heavy chain

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