SMTL ID : 4fl4.1 (3 other biounits)

Scaffoldin conformation and dynamics revealed by a ternary complex from the Clostridium thermocellum cellulosome

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.24, N.26, D.28, K.30, N.32, D.35 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.24, A:D.28, A:K.30, A:D.35, A:D.35 CA.2: 5 residues within 4Å: Chain A: D.60, N.62, D.64, R.66, D.71 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.60, A:D.64, A:R.66, A:D.71 CA.9: 5 residues within 4Å: Chain C: D.251, V.253, D.255, S.257, D.262 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.251, C:V.253, C:D.255, C:S.257, C:D.262 CA.10: 5 residues within 4Å: Chain C: D.284, N.286, N.288, A.290, D.295 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.284, C:A.290, C:D.295, C:D.295

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain B: A.123, E.124, E.125, S.126 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.125, B:S.126 SO4.4: 3 residues within 4Å: Chain B: R.41, T.83, G.127 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.83 Salt bridges: B:R.41 SO4.5: 4 residues within 4Å: Chain B: K.24, F.25, P.177, D.178 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.25, B:F.25, B:D.178, B:D.178 SO4.6: 2 residues within 4Å: Chain B: K.86, N.87 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.86 SO4.7: 3 residues within 4Å: Chain B: T.39, R.41, K.131 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.41, B:K.131 SO4.8: 3 residues within 4Å: Chain B: K.140, S.141, L.182 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.141 SO4.11: 5 residues within 4Å: Chain C: R.225, P.244, I.245, M.246, D.311 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:M.246, C:D.311 Salt bridges: C:R.225 SO4.12: 2 residues within 4Å: Chain C: R.219, R.287 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.287 Salt bridges: C:R.219 SO4.13: 2 residues within 4Å: Chain C: K.12, R.15 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.12, C:R.15 SO4.14: 1 residues within 4Å: Chain C: N.67 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.67 SO4.15: 3 residues within 4Å: Chain C: N.67, P.68, T.69 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.67, C:T.69, C:T.69 SO4.16: 2 residues within 4Å: Chain C: P.34, Q.35 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.35 SO4.17: 3 residues within 4Å: Chain C: K.112, E.113, G.114 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.113, C:G.114 Salt bridges: C:K.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Currie, M.A. et al., Scaffoldin Conformation and Dynamics Revealed by a Ternary Complex from the Clostridium thermocellum Cellulosome. J.Biol.Chem. (2012)

Release Date

2012-06-27

Peptides

Glycoside hydrolase family 9: A
Scaffolding dockerin binding protein A: B
Cellulosome anchoring protein cohesin region: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Glycoside hydrolase family 9

Scaffolding dockerin binding protein A

Cellulosome anchoring protein cohesin region

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