SMTL ID : 4flb.1

CID of human RPRD2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Q.69, K.72, R.80, R.113 Chain B: R.113 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.72, A:K.72, A:R.113 Salt bridges: A:K.72, A:R.80, A:R.113 SO4.2: 3 residues within 4Å: Chain A: R.105 Chain B: R.73, K.74 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.73, B:K.74, A:R.105 Water bridges: A:R.105 SO4.10: 5 residues within 4Å: Chain A: R.113 Chain B: Q.69, K.72, R.80, R.113 6 PLIP interactions: 6 interactions with chain B Water bridges: B:K.72, B:K.72, B:R.113 Salt bridges: B:K.72, B:R.80, B:R.113 SO4.11: 3 residues within 4Å: Chain A: R.73, K.74 Chain B: R.105 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.73, A:K.74, B:R.105 Water bridges: B:R.105

4 x PR: PRASEODYMIUM ION(Non-covalent)

PR.3: 2 residues within 4Å: Chain A: E.7, D.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.7, A:E.7, A:D.11 PR.4: 1 residues within 4Å: Chain A: E.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.7 PR.12: 2 residues within 4Å: Chain B: E.7, D.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.7, B:E.7, B:D.11 PR.13: 1 residues within 4Å: Chain B: E.7 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.7

10 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 1 residues within 4Å: Chain A: R.57 No protein-ligand interaction detected (PLIP) UNX.6: 2 residues within 4Å: Chain A: R.12, K.13 No protein-ligand interaction detected (PLIP) UNX.7: 1 residues within 4Å: Chain A: S.129 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain A: K.74 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: V.17, H.56 No protein-ligand interaction detected (PLIP) UNX.14: 1 residues within 4Å: Chain B: R.57 No protein-ligand interaction detected (PLIP) UNX.15: 2 residues within 4Å: Chain B: R.12, K.13 No protein-ligand interaction detected (PLIP) UNX.16: 1 residues within 4Å: Chain B: S.129 No protein-ligand interaction detected (PLIP) UNX.17: 1 residues within 4Å: Chain B: K.74 No protein-ligand interaction detected (PLIP) UNX.18: 2 residues within 4Å: Chain B: V.17, H.56 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, Z. et al., RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol. (2014)

Release Date

2012-08-15

Peptides

Regulation of nuclear pre-mRNA domain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Regulation of nuclear pre-mRNA domain-containing protein 2