SMTL ID : 4fmf.1 (1 other biounit)

Crystal structure of human nectin-1 full ectodomain (D1-D3)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: L.86, N.146, N.170, N.172, T.174 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.146 NAG-NAG.2: 5 residues within 4Å: Chain B: I.13, L.86, N.146, N.172, T.174 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.146, B:N.146

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 6 residues within 4Å: Chain A: S.151, V.152, V.153, Y.165, E.167, V.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.153 FMT.4: 1 residues within 4Å: Chain B: H.201 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.201

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, O.J. et al., Nectin ectodomain structures reveal a canonical adhesive interface. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-08-22

Peptides

Poliovirus receptor-related protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Poliovirus receptor-related protein 1

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