- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-pentamer
- Ligands
- 1 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 8 residues within 4Å:- Chain A: N.131, H.133, Q.217, P.223, T.224, V.225, L.226
- Ligands: CL.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.217, A:P.223, A:V.225
- Water bridges: A:Q.217
GOL.3: 5 residues within 4Å:- Chain A: K.116, R.117, V.118, H.119, D.120
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.116, A:R.117
- Water bridges: A:K.116, A:D.120, A:Y.121
GOL.5: 7 residues within 4Å:- Chain B: N.131, H.133, Q.217, P.223, T.224, V.225
- Ligands: CL.7
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.215, B:Q.217, B:P.223, B:V.225
- Water bridges: B:Q.217
GOL.6: 5 residues within 4Å:- Chain B: K.116, R.117, V.118, H.119, D.120
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.116, B:R.117, B:V.118, B:D.120
- Water bridges: B:K.116, B:D.120
GOL.8: 8 residues within 4Å:- Chain C: N.131, H.133, Q.217, P.223, T.224, V.225, L.226
- Ligands: CL.10
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.131, C:S.215, C:Q.217, C:V.225
- Water bridges: C:Q.217, C:V.225
GOL.9: 4 residues within 4Å:- Chain C: K.116, R.117, H.119, D.120
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.116, C:R.117, C:D.120
- Water bridges: C:K.116, C:K.116
GOL.11: 8 residues within 4Å:- Chain D: N.131, H.133, Q.217, P.223, T.224, V.225, L.226
- Ligands: CL.13
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:S.215, D:Q.217, D:P.223, D:V.225
- Water bridges: D:Q.217
GOL.12: 4 residues within 4Å:- Chain D: K.116, R.117, H.119, D.120
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:K.116, D:D.120
- Water bridges: D:R.117, D:R.117, D:R.117, D:D.120
GOL.14: 8 residues within 4Å:- Chain E: N.131, H.133, S.215, Q.217, P.223, T.224, V.225
- Ligands: CL.16
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:S.215, E:Q.217, E:P.223, E:V.225
- Water bridges: E:Q.217
GOL.15: 4 residues within 4Å:- Chain E: K.116, R.117, H.119, D.120
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:K.116, E:R.117, E:D.120
- Water bridges: E:D.120
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 6 residues within 4Å:- Chain A: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.2
Ligand excluded by PLIPCL.7: 6 residues within 4Å:- Chain B: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.5
Ligand excluded by PLIPCL.10: 6 residues within 4Å:- Chain C: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.8
Ligand excluded by PLIPCL.13: 6 residues within 4Å:- Chain D: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.11
Ligand excluded by PLIPCL.16: 6 residues within 4Å:- Chain E: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.14
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neu, U. et al., Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection. Plos Pathog. (2012)
- Release Date
- 2012-09-05
- Peptides
- VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
GC
HD
IE
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-pentamer
- Ligands
- 1 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neu, U. et al., Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection. Plos Pathog. (2012)
- Release Date
- 2012-09-05
- Peptides
- VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
GC
HD
IE
J