- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-pentamer
- Ligands
- 3 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 8 residues within 4Å:- Chain A: N.131, H.133, S.215, Q.217, P.223, T.224, V.225
- Ligands: CL.6
Ligand excluded by PLIPGOL.5: 4 residues within 4Å:- Chain A: K.116, R.117, H.119, D.120
Ligand excluded by PLIPGOL.7: 6 residues within 4Å:- Chain A: Q.145, L.181, K.186, S.205
- Chain E: E.25, Y.27
Ligand excluded by PLIPGOL.8: 6 residues within 4Å:- Chain B: N.44, W.45, Y.112, W.113
- Chain C: D.150, Q.152
Ligand excluded by PLIPGOL.9: 8 residues within 4Å:- Chain B: N.131, H.133, S.215, Q.217, P.223, T.224, V.225
- Ligands: CL.12
Ligand excluded by PLIPGOL.10: 8 residues within 4Å:- Chain B: E.208, N.209, R.211, D.238, V.242, G.243, P.244, L.245
Ligand excluded by PLIPGOL.11: 5 residues within 4Å:- Chain B: K.116, R.117, V.118, H.119, D.120
Ligand excluded by PLIPGOL.13: 8 residues within 4Å:- Chain C: N.44, W.45, Y.112, W.113
- Chain D: D.150, Y.151, Q.152, Q.179
Ligand excluded by PLIPGOL.14: 9 residues within 4Å:- Chain C: N.131, H.133, S.215, Q.217, P.223, T.224, V.225, L.226
- Ligands: CL.17
Ligand excluded by PLIPGOL.15: 8 residues within 4Å:- Chain C: E.208, N.209, R.211, D.238, V.242, G.243, P.244, L.245
Ligand excluded by PLIPGOL.16: 4 residues within 4Å:- Chain C: K.116, R.117, H.119, D.120
Ligand excluded by PLIPGOL.18: 8 residues within 4Å:- Chain D: N.131, H.133, S.215, Q.217, P.223, T.224, V.225
- Ligands: CL.21
Ligand excluded by PLIPGOL.19: 4 residues within 4Å:- Chain D: K.116, R.117, H.119, D.120
Ligand excluded by PLIPGOL.20: 4 residues within 4Å:- Chain D: W.45, Y.50, D.51, K.264
Ligand excluded by PLIPGOL.22: 7 residues within 4Å:- Chain E: N.131, H.133, Q.217, P.223, T.224, V.225
- Ligands: CL.24
Ligand excluded by PLIPGOL.23: 4 residues within 4Å:- Chain E: K.116, R.117, H.119, D.120
Ligand excluded by PLIP- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 6 residues within 4Å:- Chain A: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.4
Ligand excluded by PLIPCL.12: 6 residues within 4Å:- Chain B: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.9
Ligand excluded by PLIPCL.17: 6 residues within 4Å:- Chain C: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.14
Ligand excluded by PLIPCL.21: 6 residues within 4Å:- Chain D: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.18
Ligand excluded by PLIPCL.24: 6 residues within 4Å:- Chain E: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.22
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neu, U. et al., Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection. Plos Pathog. (2012)
- Release Date
- 2012-09-05
- Peptides
- VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
LC
MD
NE
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-pentamer
- Ligands
- 3 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neu, U. et al., Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection. Plos Pathog. (2012)
- Release Date
- 2012-09-05
- Peptides
- VP1: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
LC
MD
NE
O