SMTL ID : 4fps.1

tRNA-Guanine Transglycosylase in complex with adamantyl-substituted lin-benzoguanine ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.318, A:C.320, A:C.323, A:H.349 ZN.4: 4 residues within 4Å: Chain B: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.318, B:C.320, B:C.323, B:H.349

2 x 0UX: 6-amino-2-(methylamino)-4-(2-{[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-ylmethyl]amino}ethyl)-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one(Non-covalent)

0UX.2: 22 residues within 4Å: Chain A: V.45, G.46, T.47, L.68, N.70, H.73, D.102, S.103, Y.106, Q.107, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, M.260, G.261, D.280, V.282 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.45, A:T.47, A:L.68, A:N.70, A:Y.106, A:M.260, A:V.282 Hydrogen bonds: A:S.103, A:Y.106, A:Q.203, A:G.230, A:L.231, A:A.232, A:D.280 Water bridges: A:L.231 Salt bridges: A:D.102, A:D.156 pi-Stacking: A:Y.106, A:Y.106 0UX.5: 22 residues within 4Å: Chain B: V.45, G.46, T.47, L.68, N.70, H.73, D.102, S.103, Y.106, Q.107, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, M.260, G.261, D.280, V.282 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.45, B:T.47, B:L.68, B:N.70, B:Y.106, B:M.260, B:V.282 Hydrogen bonds: B:S.103, B:Y.106, B:Q.203, B:G.230, B:L.231, B:A.232, B:D.280 Water bridges: B:Y.106, B:L.231 Salt bridges: B:D.102, B:D.156 pi-Stacking: B:Y.106, B:Y.106

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: P.56, E.57, G.94, W.95, D.96, R.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.56, A:G.94, A:D.96, A:R.97 Water bridges: A:E.57 GOL.6: 6 residues within 4Å: Chain B: P.56, E.57, G.94, W.95, D.96, R.97 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:P.56, B:G.94, B:D.96, B:R.97 Water bridges: B:E.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Immekus, F. et al., Studies on TGT homodimer interface. To be Published

Release Date

2013-07-24

Peptides

Queuine tRNA-ribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Queuine tRNA-ribosyltransferase

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