- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 7 residues within 4Å:- Chain A: D.76, G.77, P.78, S.79, L.81, D.99, E.102
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.76, A:G.77, A:S.79, A:D.99, A:E.102
CA.4: 5 residues within 4Å:- Chain A: A.58, D.59, N.91, G.93, D.95
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.59, A:N.91, A:G.93, A:D.95
CA.5: 4 residues within 4Å:- Chain A: D.188, D.232, S.280, D.329
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.188, A:D.232, A:S.280, A:D.329, H2O.1
CA.6: 5 residues within 4Å:- Chain A: I.190, A.234, A.282, V.331
- Ligands: CL.7
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:I.190, A:A.234, A:A.282, A:V.331
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 2 residues within 4Å:- Chain A: S.364, I.365
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.365
EDO.9: 4 residues within 4Å:- Chain A: Y.337, E.348, V.357, R.358
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.348, A:R.358
EDO.10: 4 residues within 4Å:- Chain A: Y.313, D.320, F.321
- Ligands: EDO.14
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.313, A:D.320, A:D.320
EDO.11: 2 residues within 4Å:- Chain A: T.177, P.178
No protein-ligand interaction detected (PLIP)EDO.12: 3 residues within 4Å:- Chain A: N.91, Y.92, D.95
No protein-ligand interaction detected (PLIP)EDO.13: 4 residues within 4Å:- Chain A: T.144, F.149, M.150, R.203
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:M.150
EDO.14: 2 residues within 4Å:- Chain A: R.301
- Ligands: EDO.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.301
EDO.15: 2 residues within 4Å:- Chain A: Y.337, W.352
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Y.337, A:S.350
EDO.16: 2 residues within 4Å:- Chain A: Y.1, N.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.2
EDO.17: 3 residues within 4Å:- Chain A: Q.160, S.161, L.162
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.161
EDO.18: 1 residues within 4Å:- Chain A: D.214
No protein-ligand interaction detected (PLIP)EDO.20: 1 residues within 4Å:- Chain B: P.25
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stura, E.A. et al., Crystal structure of full-length human collagenase 3 (MMP-13) with peptides in the active site defines exosites in the catalytic domain. Faseb J. (2013)
- Release Date
- 2013-08-21
- Peptides
- Collagenase 3: A
Collagenase 3, pro-domain peptide: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stura, E.A. et al., Crystal structure of full-length human collagenase 3 (MMP-13) with peptides in the active site defines exosites in the catalytic domain. Faseb J. (2013)
- Release Date
- 2013-08-21
- Peptides
- Collagenase 3: A
Collagenase 3, pro-domain peptide: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
C