SMTL ID : 4fvf.1

SPFH domain of mouse stomatin (Crystal form 1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

homo-dimer

Ligands

13 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.1: 1 residues within 4Å: Chain A: D.81 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.81, A:D.81 CD.2: 2 residues within 4Å: Chain A: E.83, E.108 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.83, A:E.83, A:E.108, A:E.108, H2O.2 CD.3: 3 residues within 4Å: Chain A: K.73, E.84, H.88 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.84, A:E.84, A:H.88, H2O.1 CD.4: 1 residues within 4Å: Chain A: D.95 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.95, A:D.95, H2O.1 CD.5: 3 residues within 4Å: Chain A: Q.42, D.94, D.98 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.94, A:D.98, A:D.98, H2O.2 CD.6: 1 residues within 4Å: Chain A: H.87 No protein-ligand interaction detected (PLIP) CD.7: 1 residues within 4Å: Chain A: H.87 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.87, H2O.1, H2O.2 CD.8: 2 residues within 4Å: Chain A: T.13 Ligands: ACT.10 5 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:T.13, H2O.1, H2O.1, H2O.2, ACT.10 CD.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CD.11: 2 residues within 4Å: Chain B: E.83, E.108 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.83, B:E.108, B:E.108, H2O.3, H2O.3 CD.12: 2 residues within 4Å: Chain B: D.94, D.98 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.94, B:D.98, B:D.98, H2O.3 CD.13: 3 residues within 4Å: Chain B: D.95, D.98, D.99 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.95, H2O.3, H2O.3 CD.14: 2 residues within 4Å: Chain B: D.34, D.111 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.34, B:D.111

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 6 residues within 4Å: Chain A: M.11, R.12, T.13, R.40, E.105 Ligands: CD.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.12 Hydrogen bonds: A:T.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brand, J. et al., A stomatin dimer modulates the activity of acid-sensing ion channels. Embo J. (2012)

Release Date

2012-08-15

Peptides

Stomatin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Stomatin