SMTL ID : 4fwd.1

Crystal structure of the Lon-like protease MtaLonC in complex with bortezomib

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-hexamer

Ligands

6 x BO2: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE(Covalent)

BO2.1: 15 residues within 4Å: Chain A: L.502, V.503, V.504, V.505, E.506, F.542, V.576, S.577, I.578, E.579, G.580, D.581, S.582, A.583, K.625 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.503, A:V.504, A:E.506, A:F.542, A:A.583 Hydrogen bonds: A:V.504, A:V.504, A:E.579, A:E.579, A:E.579, A:D.581, A:S.582, A:K.625 BO2.3: 15 residues within 4Å: Chain B: L.502, V.503, V.504, V.505, E.506, F.542, V.576, S.577, I.578, E.579, G.580, D.581, S.582, A.583, K.625 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:V.503, B:V.504, B:E.506, B:F.542, B:A.583 Hydrogen bonds: B:V.504, B:V.504, B:E.579, B:E.579, B:E.579, B:D.581, B:S.582, B:K.625 BO2.5: 15 residues within 4Å: Chain C: L.502, V.503, V.504, V.505, E.506, F.542, V.576, S.577, I.578, E.579, G.580, D.581, S.582, A.583, K.625 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:V.503, C:V.504, C:E.506, C:F.542, C:A.583 Hydrogen bonds: C:V.504, C:V.504, C:E.579, C:E.579, C:E.579, C:D.581, C:S.582, C:K.625 BO2.7: 15 residues within 4Å: Chain D: L.502, V.503, V.504, V.505, E.506, F.542, V.576, S.577, I.578, E.579, G.580, D.581, S.582, A.583, K.625 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:V.503, D:V.504, D:E.506, D:F.542, D:A.583 Hydrogen bonds: D:V.504, D:V.504, D:E.579, D:E.579, D:E.579, D:D.581, D:S.582, D:K.625 BO2.9: 15 residues within 4Å: Chain E: L.502, V.503, V.504, V.505, E.506, F.542, V.576, S.577, I.578, E.579, G.580, D.581, S.582, A.583, K.625 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:V.503, E:V.504, E:E.506, E:F.542, E:A.583 Hydrogen bonds: E:V.504, E:V.504, E:E.579, E:E.579, E:E.579, E:D.581, E:S.582, E:K.625 BO2.11: 15 residues within 4Å: Chain F: L.502, V.503, V.504, V.505, E.506, F.542, V.576, S.577, I.578, E.579, G.580, D.581, S.582, A.583, K.625 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:V.503, F:V.504, F:E.506, F:F.542, F:A.583 Hydrogen bonds: F:V.504, F:V.504, F:E.579, F:E.579, F:E.579, F:D.581, F:S.582, F:K.625

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: P.54, S.56, L.57, G.58, K.59, H.60 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.56, A:L.57, A:G.58, A:K.59, A:H.60 Water bridges: A:K.59, A:H.60 Salt bridges: A:K.59, A:H.60 PO4.4: 6 residues within 4Å: Chain B: P.54, S.56, L.57, G.58, K.59, H.60 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.56, B:L.57, B:G.58, B:K.59, B:H.60 Water bridges: B:K.59, B:H.60 Salt bridges: B:K.59, B:H.60 PO4.6: 6 residues within 4Å: Chain C: P.54, S.56, L.57, G.58, K.59, H.60 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.56, C:L.57, C:G.58, C:K.59, C:H.60 Water bridges: C:K.59, C:H.60 Salt bridges: C:K.59, C:H.60 PO4.8: 6 residues within 4Å: Chain D: P.54, S.56, L.57, G.58, K.59, H.60 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:S.56, D:L.57, D:G.58, D:K.59, D:H.60 Water bridges: D:K.59, D:H.60 Salt bridges: D:K.59, D:H.60 PO4.10: 6 residues within 4Å: Chain E: P.54, S.56, L.57, G.58, K.59, H.60 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:S.56, E:L.57, E:G.58, E:K.59, E:H.60 Water bridges: E:K.59, E:H.60 Salt bridges: E:K.59, E:H.60 PO4.12: 6 residues within 4Å: Chain F: P.54, S.56, L.57, G.58, K.59, H.60 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:S.56, F:L.57, F:G.58, F:K.59, F:H.60 Water bridges: F:K.59, F:H.60 Salt bridges: F:K.59, F:H.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, J.H. et al., Structures of an ATP-independent Lon-like protease and its complexes with covalent inhibitors. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-06-26

Peptides

TTC1975 peptidase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

TTC1975 peptidase

Related Entries With Identical Sequence