SMTL ID : 4fxa.1

Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with N-acetyl arginine at 1.7 Angstrom resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: N.84, P.106, Y.107, S.108, R.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.84, A:S.108, A:R.113 Water bridges: A:N.84 GOL.2: 6 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8 Water bridges: A:A.9, A:A.9

1 x AAG: N-ALPHA-L-ACETYL-ARGININE(Non-covalent)

AAG.3: 11 residues within 4Å: Chain A: V.69, Y.70, I.71, M.72, E.85, G.109, N.110, I.155, A.159, E.160, R.163 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.70, A:I.71 Hydrogen bonds: A:I.71, A:G.109, A:G.109, A:R.163, A:R.163 Water bridges: A:E.85, A:N.110 Salt bridges: A:E.85, A:R.163

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: T.226, N.227, T.229, S.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:N.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, A. et al., Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with N-acetyl arginine at 1.7 Angstrom resolution. To be Published

Release Date

2012-07-25

Peptides

rRNA N-glycosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N-glycosidase

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