SMTL ID : 4fxs.1

Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae complexed with IMP and mycophenolic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 22 residues within 4Å: Chain A: A.49, M.51, N.279, G.304, S.305, I.306, C.307, D.340, G.341, G.342, M.361, V.362, G.363, S.364, Y.387, G.389, M.390, G.391, S.392, E.417, G.418 Ligands: MOA.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.279, A:S.305, A:D.340, A:G.342, A:I.343, A:G.363, A:S.364, A:S.364, A:G.391, A:S.392 Water bridges: A:G.304, A:G.341, A:I.343, A:I.343, A:S.364, A:S.364 IMP.4: 22 residues within 4Å: Chain B: A.49, M.51, N.279, G.304, S.305, I.306, C.307, D.340, G.341, G.342, M.361, V.362, G.363, S.364, Y.387, G.389, M.390, G.391, S.392, E.417, G.418 Ligands: MOA.5 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.279, B:S.305, B:D.340, B:G.342, B:I.343, B:G.363, B:S.364, B:S.364, B:G.391, B:S.392 Water bridges: B:G.304, B:G.341, B:I.343, B:I.343, B:S.364, B:S.364 IMP.7: 22 residues within 4Å: Chain C: A.49, M.51, N.279, G.304, S.305, I.306, C.307, D.340, G.341, G.342, M.361, V.362, G.363, S.364, Y.387, G.389, M.390, G.391, S.392, E.417, G.418 Ligands: MOA.8 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:N.279, C:S.305, C:D.340, C:G.342, C:I.343, C:G.363, C:S.364, C:S.364, C:G.391, C:S.392 Water bridges: C:G.304, C:G.341, C:I.343, C:I.343, C:S.364, C:S.364 IMP.10: 22 residues within 4Å: Chain D: A.49, M.51, N.279, G.304, S.305, I.306, C.307, D.340, G.341, G.342, M.361, V.362, G.363, S.364, Y.387, G.389, M.390, G.391, S.392, E.417, G.418 Ligands: MOA.11 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:N.279, D:S.305, D:D.340, D:G.342, D:I.343, D:G.363, D:S.364, D:S.364, D:G.391, D:S.392 Water bridges: D:G.304, D:G.341, D:I.343, D:I.343, D:S.364, D:S.364

4 x MOA: MYCOPHENOLIC ACID(Non-covalent)

MOA.2: 13 residues within 4Å: Chain A: D.250, S.251, S.252, N.279, G.300, I.301, G.302, C.307, T.309, D.340, M.390, G.391 Ligands: IMP.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.252, A:G.302 MOA.5: 13 residues within 4Å: Chain B: D.250, S.251, S.252, N.279, G.300, I.301, G.302, C.307, T.309, D.340, M.390, G.391 Ligands: IMP.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.252, B:G.302 MOA.8: 13 residues within 4Å: Chain C: D.250, S.251, S.252, N.279, G.300, I.301, G.302, C.307, T.309, D.340, M.390, G.391 Ligands: IMP.7 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.252, C:G.302 MOA.11: 13 residues within 4Å: Chain D: D.250, S.251, S.252, N.279, G.300, I.301, G.302, C.307, T.309, D.340, M.390, G.391 Ligands: IMP.10 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.252, D:G.302

4 x K: POTASSIUM ION(Non-covalent)

K.3: 7 residues within 4Å: Chain A: G.302, G.304, C.307 Chain D: E.471, S.472, H.473, H.475 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Metal complexes: D:E.471, D:S.472, D:H.473, A:G.304, A:C.307 K.6: 7 residues within 4Å: Chain B: G.302, G.304, C.307 Chain C: E.471, S.472, H.473, H.475 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C Metal complexes: B:G.304, B:C.307, C:E.471, C:S.472, C:H.473 K.9: 7 residues within 4Å: Chain A: E.471, S.472, H.473, H.475 Chain C: G.302, G.304, C.307 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Metal complexes: A:E.471, A:S.472, A:H.473, C:G.304, C:C.307 K.12: 7 residues within 4Å: Chain B: E.471, S.472, H.473, H.475 Chain D: G.302, G.304, C.307 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain D Metal complexes: B:E.471, B:S.472, B:H.473, D:G.304, D:C.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Inosine 5'-monophosphate dehydrogenase from Vibrio cholerae complexed with IMP and mycophenolic acid. To be Published

Release Date

2012-07-25

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Inosine-5'-monophosphate dehydrogenase