SMTL ID : 4fyd.1 (1 other biounit)

Crystal structure of yeast DNA polymerase alpha bound to DNA/RNA and dGTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DGT.1: 19 residues within 4Å: Chain A: D.516, F.517, N.518, S.519, L.520, Y.521, P.522, R.569, K.573, K.596, L.597, N.600, Y.603, G.604, T.649, N.650 Chain B: C.13, C.14 Chain C: G.12 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.521 Hydrogen bonds: A:D.516, A:N.518, A:S.519, A:L.520, A:Y.521, A:N.600, A:G.604, A:N.650 Salt bridges: A:R.569, A:R.569, A:K.573, A:K.596, A:K.596, A:K.596

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perera, R.L. et al., Mechanism for priming DNA synthesis by yeast DNA Polymerase alpha. eLife (2013)

Release Date

2013-02-27

Peptides

DNA polymerase alpha catalytic subunit A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase alpha catalytic subunit A

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