SMTL ID : 4fyi.1 (1 other biounit)

Crystal structure of rcl with 6-cyclopentyl-AMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x 6C6: N-cyclopentyladenosine 5'-(dihydrogen phosphate)(Non-covalent)

6C6.1: 16 residues within 4Å: Chain A: Y.6, C.8, G.9, S.10, I.11, R.12, G.13, I.58, N.62, S.80, G.82, V.83, E.86 Chain B: S.110, A.111, M.112 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.11, A:I.58 Hydrogen bonds: A:G.9, A:I.11, A:R.12, A:G.13, A:N.62, A:S.80, A:S.80, A:L.81, A:G.82, A:V.83, B:S.110 Water bridges: A:F.7, A:G.9, A:N.62 6C6.2: 18 residues within 4Å: Chain A: S.110, A.111, M.112 Chain B: Y.6, C.8, G.9, S.10, I.11, R.12, G.13, V.39, I.58, N.62, S.80, L.81, G.82, V.83, E.86 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:I.58 Hydrogen bonds: B:Y.6, B:G.9, B:I.11, B:R.12, B:G.13, B:N.62, B:S.80, B:L.81, B:G.82, B:V.83, A:S.110 Water bridges: B:N.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Padilla, A. et al., Structure of the oncoprotein Rcl bound to three nucleotide analogues. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-01-02

Peptides

Deoxyribonucleoside 5'-monophosphate N-glycosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Deoxyribonucleoside 5'-monophosphate N-glycosidase

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