SMTL ID : 4fzv.1

Crystal structure of the human MTERF4:NSUN4:SAM ternary complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-oligomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 20 residues within 4Å: Chain A: L.155, C.156, A.157, A.158, P.159, G.160, G.161, K.162, N.178, D.179, L.180, S.181, R.184, W.211, D.212, G.213, D.230, V.231, P.232, L.266 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:C.156, A:A.158, A:A.158, A:G.160, A:G.161, A:K.162, A:L.180, A:S.181, A:R.184, A:R.184, A:D.212, A:D.212, A:G.213, A:D.230 Water bridges: A:T.163, A:T.163 Salt bridges: A:K.162, A:D.230

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 8 residues within 4Å: Chain A: Q.30, L.287, H.289, N.292, E.293, F.330, C.333, L.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.287, A:N.292

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: Q.265 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yakubovskaya, E. et al., Structure of the Essential MTERF4:NSUN4 Protein Complex Reveals How an MTERF Protein Collaborates to Facilitate rRNA Modification. Structure (2012)

Release Date

2012-10-03

Peptides

Putative methyltransferase NSUN4: A
mTERF domain-containing protein 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative methyltransferase NSUN4

mTERF domain-containing protein 2