SMTL ID : 4g33.2 (1 other biounit)

Crystal Structure of a Phospholipid-Lipoxygenase Complex from Pseudomonas aeruginosa at 2.0 A (C2221)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.380, H.385, H.558, N.562, I.688 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.380, A:H.385, A:H.558, A:I.688, H2O.1 FE2.8: 5 residues within 4Å: Chain B: H.380, H.385, H.558, N.562, I.688 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.380, B:H.385, B:H.558, B:I.688, H2O.10

2 x ZPE: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradec-5-enoyloxy)propyl (11Z)-octadec-11-enoate(Non-covalent)

ZPE.2: 29 residues within 4Å: Chain A: W.108, T.112, I.116, L.119, I.120, F.123, L.185, V.188, G.189, D.193, E.376, H.380, H.385, F.418, I.419, G.422, A.423, I.426, L.427, I.434, F.438, N.610, Y.612, L.614, L.615, I.688 Chain B: S.25, I.26, F.27 18 PLIP interactions: 2 interactions with chain B, 16 interactions with chain A Hydrogen bonds: B:S.25, B:I.26, A:D.193 Hydrophobic interactions: A:W.108, A:T.112, A:I.116, A:L.119, A:I.120, A:F.123, A:I.419, A:I.419, A:I.426, A:L.427, A:L.427, A:I.434, A:F.438, A:Y.612, A:L.614 ZPE.9: 29 residues within 4Å: Chain A: S.25, I.26, F.27 Chain B: W.108, T.112, I.116, L.119, I.120, F.123, L.185, V.188, G.189, D.193, E.376, H.380, H.385, F.418, I.419, G.422, A.423, I.426, L.427, I.434, F.438, N.610, Y.612, L.614, L.615, I.688 18 PLIP interactions: 16 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.108, B:T.112, B:I.116, B:L.119, B:I.120, B:F.123, B:I.419, B:I.419, B:I.426, B:L.427, B:L.427, B:I.434, B:F.438, B:Y.612, B:L.614 Hydrogen bonds: B:D.193, A:S.25, A:I.26

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.305, D.435, P.441, I.442, Q.443 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.435, A:I.442, A:Q.443 GOL.4: 6 residues within 4Å: Chain A: E.102, C.392, Q.396, A.410, F.413, E.414 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.396 Water bridges: A:G.101, A:G.101, A:G.415, A:G.415 GOL.5: 5 residues within 4Å: Chain A: K.90, G.91, A.447, G.450, G.451 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.450 GOL.6: 7 residues within 4Å: Chain A: F.219, L.222, R.223, P.225, P.566, T.570, H.613 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.566, A:H.613 GOL.7: 3 residues within 4Å: Chain A: R.640 Chain B: N.62, L.63 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.63 GOL.10: 5 residues within 4Å: Chain B: K.305, D.435, P.441, I.442, Q.443 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.435, B:I.442, B:Q.443 GOL.11: 6 residues within 4Å: Chain B: E.102, C.392, Q.396, A.410, F.413, E.414 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.396 Water bridges: B:G.101, B:G.101, B:G.415, B:G.415 GOL.12: 5 residues within 4Å: Chain B: K.90, G.91, A.447, G.450, G.451 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.450 GOL.13: 7 residues within 4Å: Chain B: F.219, L.222, R.223, P.225, P.566, T.570, H.613 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.566 GOL.14: 3 residues within 4Å: Chain A: N.62, L.63 Chain B: R.640 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garreta, A. et al., Structure and interaction with phospholipids of a prokaryotic lipoxygenase from Pseudomonas aeruginosa. Faseb J. (2013)

Release Date

2013-11-06

Peptides

15S-LIPOXYGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

15S-LIPOXYGENASE

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