SMTL ID : 4g4g.1

Crystal structure of recombinant glucuronoyl esterase from Sporotrichum thermophile determined at 1.55 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: N.50, Y.51, T.53, Q.90, Y.91, H.292 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.50, A:Y.91, A:Y.91 Water bridges: A:Q.90 EDO.2: 3 residues within 4Å: Chain A: R.220, Y.377, F.378 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.220 Water bridges: A:R.220, A:N.349, A:N.349, A:Y.377 EDO.3: 1 residues within 4Å: Chain A: K.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.70 EDO.4: 6 residues within 4Å: Chain A: D.61, T.64, K.70, W.403, G.406, A.407 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.64, A:K.70, A:K.70, A:W.403, A:G.406 Water bridges: A:V.71 EDO.5: 2 residues within 4Å: Chain A: K.342, P.347 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.338 EDO.6: 2 residues within 4Å: Chain A: D.186, R.287 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.287 EDO.7: 2 residues within 4Å: Chain A: R.287, P.291 No protein-ligand interaction detected (PLIP) EDO.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.9: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.348 EDO.10: 2 residues within 4Å: Chain A: E.389 Ligands: GOL.16 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.338, A:E.389, A:E.389, A:S.391 EDO.11: 1 residues within 4Å: Chain A: M.169 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.163 EDO.12: 5 residues within 4Å: Chain A: S.353, S.366, Q.367, D.370, H.390 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.353, A:S.366 EDO.13: 1 residues within 4Å: Ligands: GOL.15 No protein-ligand interaction detected (PLIP) EDO.14: 3 residues within 4Å: Chain A: T.65, A.66, G.68 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.15: 2 residues within 4Å: Chain A: D.181 Ligands: EDO.13 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.181 Water bridges: A:G.175, A:D.181, A:D.181 GOL.16: 8 residues within 4Å: Chain A: T.331, E.389, S.391, V.393, N.394, V.395, V.397 Ligands: EDO.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.389, A:N.394, A:V.395

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Charavgi, M.D. et al., The structure of a novel glucuronoyl esterase from Myceliophthora thermophila gives new insights into its role as a potential biocatalyst. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-01-02

Peptides

4-O-methyl-glucuronoyl methylesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-O-methyl-glucuronoyl methylesterase