SMTL ID : 4g5g.1

ef-tu (Escherichia coli) complexed with nvp-ldu796

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.26, C.82 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.26, H2O.1, H2O.1, H2O.1, H2O.1 MG.3: 1 residues within 4Å: Chain A: E.153 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 17 residues within 4Å: Chain A: H.20, V.21, D.22, H.23, G.24, K.25, T.26, T.27, F.47, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Ligands: MG.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.22, A:H.23, A:G.24, A:K.25, A:T.26, A:T.27, A:T.27, A:N.136, A:K.137, A:K.137, A:S.174, A:L.176 Water bridges: A:D.22, A:K.25, A:T.26, A:T.26, A:T.27, A:C.82 Salt bridges: A:K.25, A:D.139 pi-Cation interactions: A:K.137

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: R.263 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

LaMarche, M.J. et al., Antibiotic optimization and chemical structure stabilization of thiomuracin A. J.Med.Chem. (2012)

Release Date

2012-12-26

Peptides

Elongation factor Tu 1: A
thiomuracin A derivative: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
I

Elongation factor Tu 1

thiomuracin A derivative

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