SMTL ID : 4gbm.1

Sulfotransferase Domain from the Curacin Biosynthetic Pathway

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: E.86, Q.89 Ligands: CL.14 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.86, A:E.86, H2O.9 ZN.2: 5 residues within 4Å: Chain A: H.261, D.269, N.271 Ligands: CL.7, CL.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.261, A:D.269, A:D.269 ZN.3: 3 residues within 4Å: Chain A: H.275, D.279 Ligands: CL.13 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.275, A:D.279 ZN.4: 5 residues within 4Å: Chain A: R.42 Ligands: A3P.6, CL.8, CL.9, CL.10 No protein-ligand interaction detected (PLIP) ZN.5: 4 residues within 4Å: Chain A: H.65, T.139 Ligands: CL.12, CL.15 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.65, H2O.6

1 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.6: 24 residues within 4Å: Chain A: R.42, S.43, G.44, S.45, T.46, L.47, R.164, S.172, R.175, Y.221, V.225, Y.251, P.270, N.271, F.272, H.275, T.277, I.278, D.279, L.282 Ligands: ZN.4, CL.8, CL.9, CL.10 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:R.42, A:S.43, A:G.44, A:S.45, A:T.46, A:T.46, A:T.46, A:R.164, A:R.164, A:S.172, A:Y.251, A:N.271, A:T.277, A:D.279 Water bridges: A:L.47, A:R.175, A:R.175, A:K.285 Salt bridges: A:R.42, A:R.42, A:K.136, A:R.175 pi-Cation interactions: A:H.275, A:H.275

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 7 residues within 4Å: Chain A: H.261, D.269, N.271, L.273, K.274 Ligands: ZN.2, CL.11 Ligand excluded by PLIP CL.8: 8 residues within 4Å: Chain A: P.41, R.42, M.178, I.267 Ligands: ZN.4, A3P.6, CL.9, CL.10 Ligand excluded by PLIP CL.9: 9 residues within 4Å: Chain A: S.45, T.46, E.63, K.136, P.138 Ligands: ZN.4, A3P.6, CL.8, CL.10 Ligand excluded by PLIP CL.10: 8 residues within 4Å: Chain A: R.42, S.268, D.269, P.270 Ligands: ZN.4, A3P.6, CL.8, CL.9 Ligand excluded by PLIP CL.11: 8 residues within 4Å: Chain A: H.261, D.269, P.270, N.271, F.272, L.273 Ligands: ZN.2, CL.7 Ligand excluded by PLIP CL.12: 7 residues within 4Å: Chain A: H.65, P.68, S.137, T.139, Y.140 Ligands: ZN.5, CL.15 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain A: H.275, N.276, T.277, D.279 Ligands: ZN.3 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain A: L.84, E.86, V.260 Ligands: ZN.1 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain A: H.65, P.68, F.69, L.79 Ligands: ZN.5, CL.12 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.16: 6 residues within 4Å: Chain A: R.75, G.85, E.86, L.88, Q.89, I.107 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.85, A:L.88, A:Q.89, A:Q.89 Water bridges: A:R.75, A:R.75, A:R.75, A:R.75 Salt bridges: A:R.75

2 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.17: 9 residues within 4Å: Chain A: Y.161, L.205, Q.216, H.217, Q.218, R.220, Q.305, L.306, S.307 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.218, A:Q.218, A:S.307 P6G.18: 9 residues within 4Å: Chain A: G.33, I.34, S.57, P.130, L.132, N.156, K.158, N.240, V.241 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.34 Water bridges: A:G.33, A:S.57, A:S.57, A:K.158, A:N.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCarthy, J.G. et al., Structural basis of functional group activation by sulfotransferases in complex metabolic pathways. Acs Chem.Biol. (2012)

Release Date

2012-10-17

Peptides

CurM Sulfotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CurM Sulfotransferase