SMTL ID : 4ggm.1 (1 other biounit)

Structure of LpxI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: E.126, G.127 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain B: E.126, G.127 No protein-ligand interaction detected (PLIP)

2 x LP5: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE(Non-covalent)

LP5.2: 18 residues within 4Å: Chain A: V.52, G.53, I.54, E.56, F.57, I.60, F.74, A.75, G.76, V.78, S.79, R.80, P.81, L.99, D.107, L.110, L.111, V.114 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.52, A:I.54, A:F.57, A:I.60, A:F.74, A:V.78, A:V.78, A:V.78, A:L.99, A:L.110, A:L.111, A:L.111 Hydrogen bonds: A:F.74, A:G.76 Water bridges: A:N.77, A:V.78, A:V.78 LP5.4: 18 residues within 4Å: Chain B: V.52, G.53, I.54, E.56, F.57, I.60, F.74, A.75, G.76, V.78, S.79, R.80, P.81, L.99, D.107, L.110, L.111, V.114 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:V.52, B:I.54, B:F.57, B:I.60, B:F.74, B:V.78, B:V.78, B:V.78, B:L.99, B:L.110, B:L.111, B:L.111 Hydrogen bonds: B:F.74, B:G.76 Water bridges: B:N.77, B:V.78, B:V.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Metzger, L.E. et al., LpxI structures reveal how a lipid A precursor is synthesized. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-10-03

Peptides

UDP-2,3-diacylglucosamine pyrophosphatase LpxI: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

UDP-2,3-diacylglucosamine pyrophosphatase LpxI

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