SMTL ID : 4gm5.2 (1 other biounit)

Carboxypeptidase T with Sulphamoil Arginine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.69, E.72, H.204, T.205 Ligands: 0X9.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204 ZN.28: 5 residues within 4Å: Chain B: H.69, E.72, H.204, T.205 Ligands: 0X9.35 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.69, B:E.72, B:E.72, B:H.204

8 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.7, A:Y.9, A:E.14, H2O.78, H2O.248 CA.3: 4 residues within 4Å: Chain A: S.50, D.51, E.57, E.59 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.50, A:D.51, A:E.57, A:E.59, H2O.85 CA.4: 3 residues within 4Å: Chain A: Y.5, D.291, E.292 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.291, A:E.292, H2O.128, H2O.263, H2O.264 CA.5: 6 residues within 4Å: Chain A: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:E.57, A:E.61, A:E.104, H2O.112, H2O.247 CA.29: 3 residues within 4Å: Chain B: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.7, B:Y.9, B:E.14, H2O.486, H2O.656 CA.30: 4 residues within 4Å: Chain B: S.50, D.51, E.57, E.59 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.50, B:D.51, B:E.57, B:E.59, H2O.493 CA.31: 3 residues within 4Å: Chain B: Y.5, D.291, E.292 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.291, B:E.292, H2O.536, H2O.671, H2O.672 CA.32: 6 residues within 4Å: Chain B: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.56, B:E.57, B:E.61, B:E.104, H2O.520, H2O.655

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: F.174, R.183, N.187, W.264, Q.268 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: V.16, N.20, K.32, W.45 Chain B: T.21, N.25 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain A: R.129, R.147, T.167, Y.255 Ligands: 0X9.8, GOL.10 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain A: T.239, Y.307, E.310, K.311 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain A: E.14, N.17 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain A: M.225, T.226, Q.227 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain A: F.33, K.48, Y.106, F.185 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain A: N.28 Chain B: K.31 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain A: N.52, V.53, G.54, T.55 Ligands: SO4.53 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain B: F.174, R.183, N.187, W.264, Q.268 Ligand excluded by PLIP SO4.34: 6 residues within 4Å: Chain A: T.21, N.25 Chain B: V.16, N.20, K.32, W.45 Ligand excluded by PLIP SO4.43: 6 residues within 4Å: Chain B: R.129, R.147, T.167, Y.255 Ligands: 0X9.35, GOL.37 Ligand excluded by PLIP SO4.44: 4 residues within 4Å: Chain B: T.239, Y.307, E.310, K.311 Ligand excluded by PLIP SO4.45: 2 residues within 4Å: Chain B: E.14, N.17 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain B: M.225, T.226, Q.227 Ligand excluded by PLIP SO4.51: 4 residues within 4Å: Chain B: F.33, K.48, Y.106, F.185 Ligand excluded by PLIP SO4.52: 2 residues within 4Å: Chain A: K.31 Chain B: N.28 Ligand excluded by PLIP SO4.53: 5 residues within 4Å: Chain B: N.52, V.53, G.54, T.55 Ligands: SO4.26 Ligand excluded by PLIP

2 x 0X9: N~2~-SULFAMOYL-L-ARGININE

0X9.8: 20 residues within 4Å: Chain A: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, Y.255, T.257, D.260, T.262, D.263, T.275, E.277 Ligands: ZN.1, GOL.10, SO4.16 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.129, A:R.129, A:N.146, A:G.215, A:Y.255, A:Y.255, A:T.257, A:T.262, A:T.275, A:E.277, A:E.277 Salt bridges: A:H.69, A:R.129, A:R.147, A:D.260, A:D.263 0X9.35: 20 residues within 4Å: Chain B: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, G.215, A.251, Y.255, T.257, D.260, T.262, D.263, T.275, E.277 Ligands: ZN.28, GOL.37, SO4.43 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:R.129, B:R.129, B:N.146, B:G.215, B:Y.255, B:Y.255, B:T.257, B:T.257, B:T.262, B:T.262, B:E.277, B:E.277 Salt bridges: B:H.69, B:R.129, B:R.147, B:D.260, B:D.263

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 3 residues within 4Å: Chain A: S.139, Y.140 Ligands: GOL.23 Ligand excluded by PLIP GOL.10: 5 residues within 4Å: Chain A: Y.206, S.207, Y.255 Ligands: 0X9.8, SO4.16 Ligand excluded by PLIP GOL.11: 4 residues within 4Å: Chain A: D.1, N.11, E.117, I.120 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain A: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.13: 3 residues within 4Å: Chain A: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.14: 3 residues within 4Å: Chain A: Y.125, S.127, Y.288 Ligand excluded by PLIP GOL.15: 3 residues within 4Å: Chain A: Y.39, Q.133, P.134 Ligand excluded by PLIP GOL.19: 6 residues within 4Å: Chain A: F.33, S.34, I.35, D.184, F.185, S.188 Ligand excluded by PLIP GOL.20: 3 residues within 4Å: Chain A: E.40, G.41, R.42 Ligand excluded by PLIP GOL.21: 3 residues within 4Å: Chain A: S.138, S.139, Y.140 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain A: W.128, S.139, Y.140, V.141 Ligands: GOL.9 Ligand excluded by PLIP GOL.27: 1 residues within 4Å: Chain A: F.287 Ligand excluded by PLIP GOL.36: 3 residues within 4Å: Chain B: S.139, Y.140 Ligands: GOL.50 Ligand excluded by PLIP GOL.37: 5 residues within 4Å: Chain B: Y.206, S.207, Y.255 Ligands: 0X9.35, SO4.43 Ligand excluded by PLIP GOL.38: 4 residues within 4Å: Chain B: D.1, N.11, E.117, I.120 Ligand excluded by PLIP GOL.39: 6 residues within 4Å: Chain B: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.40: 3 residues within 4Å: Chain B: P.3, S.4, Y.5 Ligand excluded by PLIP GOL.41: 3 residues within 4Å: Chain B: Y.125, S.127, Y.288 Ligand excluded by PLIP GOL.42: 3 residues within 4Å: Chain B: Y.39, Q.133, P.134 Ligand excluded by PLIP GOL.46: 6 residues within 4Å: Chain B: F.33, S.34, I.35, D.184, F.185, S.188 Ligand excluded by PLIP GOL.47: 3 residues within 4Å: Chain B: E.40, G.41, R.42 Ligand excluded by PLIP GOL.48: 3 residues within 4Å: Chain B: S.138, S.139, Y.140 Ligand excluded by PLIP GOL.50: 5 residues within 4Å: Chain B: W.128, S.139, Y.140, V.141 Ligands: GOL.36 Ligand excluded by PLIP GOL.54: 1 residues within 4Å: Chain B: F.287 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuznetsov, S.A. et al., Carboxypeptidase T with Sulphamoil Arginine. To be Published

Release Date

2013-08-21

Peptides

Carboxypeptidase T: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Carboxypeptidase T

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