SMTL ID : 4gmd.1 (1 other biounit)

The crystal structure of thymidylate kinase from Pseudomonas aeruginosa PAO1 in complex with AZT Monophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x ATM: 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE(Non-covalent)

ATM.1: 14 residues within 4Å: Chain A: E.42, P.43, R.53, M.73, R.77, R.99, F.100, A.103, T.104, Y.107, Q.108, R.154, F.158, F.166 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:E.42, A:R.99, A:A.103, A:Y.107 Hydrogen bonds: A:R.77, A:Q.108, A:Q.108, A:R.154 Water bridges: A:R.41, A:R.99, A:R.99 Salt bridges: A:R.53, A:R.99, A:R.154 ATM.4: 13 residues within 4Å: Chain B: E.42, P.43, R.53, M.73, R.77, R.99, F.100, A.103, T.104, Y.107, Q.108, F.158, F.166 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:E.42, B:R.99, B:A.103, B:Y.107 Hydrogen bonds: B:R.77, B:R.77, B:Q.108, B:Q.108 Water bridges: B:R.41, B:D.98, B:E.159, B:E.159 Salt bridges: B:R.53, B:R.99

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.23, T.40, R.41 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: R.23, T.40, R.41 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain B: G.13, P.14, R.99, Y.107, V.169, Y.173 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: P.181, E.182, Y.184, Q.185, V.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of thymidylate kinase from Pseudomonas aeruginosa PAO1 in complex with AZT Monophosphate. To be Published

Release Date

2012-08-29

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Thymidylate kinase

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