SMTL ID : 4grn.1

crystal structure of PAAM mutant of human MIF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-trimer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: N.10, S.55 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: G.83, A.86, P.93 Chain B: N.112 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: M.103, N.104, N.107 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: N.111 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: Q.37 Chain C: R.95 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: R.95 Chain B: Q.37 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: K.34, K.68 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: M.103, N.104, N.107 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: R.88 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain C: G.70, G.71, A.72, Q.73 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain C: P.35, P.36, Q.37 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain C: M.103, N.104, N.107 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: G.70, G.71, A.72, Q.73 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.71, A:A.72, A:Q.73, A:Q.73 SO4.7: 4 residues within 4Å: Chain A: Q.47 Chain B: V.44, Q.47 Chain C: Q.47 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:Q.47, C:Q.47, C:Q.47, B:Q.47 Water bridges: A:D.46 SO4.12: 1 residues within 4Å: Chain B: R.75 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C Water bridges: B:R.75, B:R.75, B:R.75, C:S.113, C:S.113 Salt bridges: B:R.75 SO4.13: 4 residues within 4Å: Chain B: G.70, G.71, A.72, Q.73 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.70, B:G.71, B:A.72, B:Q.73, B:Q.73

1 x NA: SODIUM ION(Non-functional Binders)

NA.16: 8 residues within 4Å: Chain A: T.25, I.39, A.40, V.41 Chain C: A.50, F.51, G.52, G.53 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:T.25, A:V.41, C:G.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, C. et al., crystallographic and biological chacerterization of N- and C-terminus of MIF. To be Published

Release Date

2013-09-25

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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