SMTL ID : 4gsy.2 (2 other biounits)

Crystal structure of thymidylate kinase from Staphylococcus aureus bound to inhibitor.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x 0Y5: 4-{[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]methyl}-2-[3-(trifluoromethyl)phenoxy]benzoic acid(Non-covalent)

0Y5.1: 15 residues within 4Å: Chain A: E.37, G.44, I.47, R.48, V.51, L.52, L.65, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.48, A:F.66, A:R.92, A:Y.100 Hydrogen bonds: A:R.70, A:R.70, A:Q.101, A:Q.101 Salt bridges: A:R.48 pi-Stacking: A:F.66 Halogen bonds: A:G.44, A:L.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Botella, G. et al., Discovery of Selective and Potent Inhibitors of Gram-Positive Bacterial Thymidylate Kinase (TMK). J.Med.Chem. (2012)

Release Date

2012-10-24

Peptides

Thymidylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Thymidylate kinase

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