SMTL ID : 4gwe.1

W116L-OYE1 complexed with (R)-carvone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: P.35, P.36, L.37, T.38, G.73, Q.115, H.192, N.195, R.244, P.296, A.324, G.325, N.326, Y.347, G.348, R.349, F.375, Y.376 Ligands: 07V.9 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.37, A:R.349, A:F.375, A:Y.376 Hydrogen bonds: A:P.36, A:T.38, A:G.73, A:Q.115, A:Q.115, A:N.195, A:R.244, A:R.244, A:N.326, A:G.348, A:R.349 Water bridges: A:E.300, A:E.300, A:G.325, A:F.327, A:F.350 Salt bridges: A:R.349

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 4 residues within 4Å: Chain A: D.52, W.53, A.380 Ligands: NA.8 No protein-ligand interaction detected (PLIP) 1PE.6: 7 residues within 4Å: Chain A: D.371, H.381, D.385, Y.386, P.387, W.397 Ligands: NA.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.385

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: S.2, W.397 Ligands: 1PE.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.2, A:S.2 NA.8: 2 residues within 4Å: Chain A: W.53 Ligands: 1PE.4 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 4 residues within 4Å: Chain A: Y.83, D.84, F.124, N.127 Ligand excluded by PLIP

1 x 07V: (5R)-2-methyl-5-(prop-1-en-2-yl)cyclohex-2-en-1-one(Non-covalent)

07V.9: 10 residues within 4Å: Chain A: T.38, L.117, H.192, N.195, Y.197, F.251, P.296, F.297, Y.376 Ligands: FMN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.117, A:Y.197, A:F.251, A:P.296, A:F.297 Hydrogen bonds: A:N.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pompeu, Y.A. et al., X‑ray Crystallography Reveals How Subtle Changes Control the Orientation of Substrate Binding in an Alkene Reductase. ACS CATALYSIS (2013)

Release Date

2012-10-03

Peptides

NADPH dehydrogenase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NADPH dehydrogenase 1

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