SMTL ID : 4gyj.1 (1 other biounit)

Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x MUB- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid(Non-covalent)

MUB-NAG.1: 22 residues within 4Å: Chain A: R.61, I.94, F.96, D.127, E.129, V.133, R.135, F.177, V.191, R.195, K.225, H.226, H.230, S.237, H.238, M.271, N.322, A.323, N.325, M.326, L.351 Ligands: NAG.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.133, A:V.191 Hydrogen bonds: A:R.61, A:R.61, A:R.135, A:R.135, A:N.325, A:N.325, A:R.135, A:R.195, A:R.195, A:K.225, A:H.226, A:N.322, A:N.322 Salt bridges: A:R.61, A:R.135, A:R.195, A:H.238

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 18 residues within 4Å: Chain A: I.94, F.96, D.127, R.135, V.191, R.195, K.225, H.226, H.230, S.237, H.238, M.271, N.322, A.323, M.326, L.351 Ligands: MUB-NAG.1, MUB-NAG.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.191 Hydrogen bonds: A:R.135, A:R.195, A:R.195, A:K.225, A:H.226, A:N.322, A:N.322 Salt bridges: A:H.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bacik, J.P. et al., Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion. Chem.Biol. (2012)

Release Date

2012-12-19

Peptides

Uncharacterized lipoprotein ybbD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized lipoprotein ybbD

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