SMTL ID : 4hao.1 (2 other biounits)

Crystal Structure of Inorganic Polyphosphate/ATP-NAD Kinase from Yersinia pestis CO92

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

6 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 8 residues within 4Å: Chain A: Q.175, L.180, L.209, P.211, A.219, R.220, L.222 Chain B: W.288 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.219, B:W.288 Hydrogen bonds: A:Q.175, A:R.220, A:L.222 ACY.2: 3 residues within 4Å: Chain A: T.23, I.26, P.107 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.26 ACY.3: 4 residues within 4Å: Chain A: E.41, Q.43, S.57, L.58 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.41 Hydrogen bonds: A:E.41, A:Q.43, A:L.58 ACY.5: 8 residues within 4Å: Chain A: W.288 Chain B: Q.175, L.180, L.209, P.211, A.219, R.220, L.222 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:W.288, B:A.219 Hydrogen bonds: B:Q.175, B:R.220, B:L.222 ACY.6: 3 residues within 4Å: Chain B: T.23, I.26, P.107 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.26 ACY.7: 4 residues within 4Å: Chain B: E.41, Q.43, S.57, L.58 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:E.41 Hydrogen bonds: B:E.41, B:Q.43, B:L.58

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: Q.175, R.176, H.215, T.216 Chain B: S.289 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:S.289, B:S.289, A:R.176, A:T.216, A:T.216 Salt bridges: A:R.176 SO4.8: 5 residues within 4Å: Chain A: S.289 Chain B: Q.175, R.176, H.215, T.216 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.176, B:H.215, B:T.216, A:S.289, A:S.289 Salt bridges: B:R.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Inorganic Polyphosphate/ATP-NAD Kinase from Yersinia pestis CO92. To be Published

Release Date

2012-10-10

Peptides

Probable inorganic polyphosphate/ATP-NAD kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Probable inorganic polyphosphate/ATP-NAD kinase

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