SMTL ID : 4hb9.1

Crystal structure of a putative FAD containing monooxygenase from Photorhabdus luminescens subsp. laumondii TTO1 (Target PSI-012791)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: I.7, G.8, A.9, G.10, I.11, G.12, Y.30, E.31, R.32, N.33, Y.43, G.44, I.45, H.46, R.111, K.130, T.131, F.132, A.161, D.162, G.163, W.225, G.317, D.318, P.325, M.326, G.328, S.329, G.330, A.331, N.332, A.334 Ligands: EDO.11 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.43, A:Y.43, A:Y.43, A:W.225 Hydrogen bonds: A:A.9, A:A.9, A:I.11, A:G.12, A:R.32, A:R.32, A:N.33, A:H.46, A:H.46, A:R.111, A:R.111, A:F.132, A:F.132, A:D.318, A:G.330, A:A.331, A:N.332, A:N.332 Water bridges: A:G.10, A:G.13, A:N.33, A:Y.43, A:Y.43, A:G.163, A:A.319 Salt bridges: A:R.111

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: L.173, P.174, F.175, I.176 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.175 EDO.3: 4 residues within 4Å: Chain A: N.48, S.49, F.50, R.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.49 EDO.4: 5 residues within 4Å: Chain A: H.18, R.21, K.22, C.58, P.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.18, A:R.21, A:R.21, A:C.58 EDO.5: 4 residues within 4Å: Chain A: W.219, S.380, N.383, A.384 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.383 EDO.6: 7 residues within 4Å: Chain A: N.48, F.50, S.329, N.332, T.333, R.336, I.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.48, A:R.336, A:R.336 EDO.7: 3 residues within 4Å: Chain A: K.22, L.59, P.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.61 Water bridges: A:K.22, A:L.59 EDO.8: 4 residues within 4Å: Chain A: A.66, E.116, I.117, K.120 No protein-ligand interaction detected (PLIP) EDO.9: 3 residues within 4Å: Chain A: Y.172, L.173, K.309 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.172, A:Y.172, A:K.309 EDO.10: 5 residues within 4Å: Chain A: E.68, S.71, R.72, Y.73, L.107 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.73 EDO.11: 6 residues within 4Å: Chain A: A.9, E.31, N.33, K.115, W.128 Ligands: FAD.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.33, A:K.115 Water bridges: A:K.115, A:N.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, H.B. et al., Stilbene epoxidation and detoxification in a Photorhabdus luminescens -nematode symbiosis. J.Biol.Chem. (2017)

Release Date

2012-10-17

Peptides

Similarities with probable monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Similarities with probable monooxygenase