- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 10 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
PLC.2: 11 residues within 4Å:- Chain A: R.118, F.121, Y.194, I.198, I.202, L.206, Y.254, I.258, N.307, F.315
- Ligands: PLC.3
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.121, A:F.121, A:F.121, A:I.198, A:I.202, A:L.206, A:Y.254, A:I.258
- Hydrogen bonds: A:R.118
PLC.3: 1 residues within 4Å:- Ligands: PLC.2
No protein-ligand interaction detected (PLIP)PLC.16: 9 residues within 4Å:- Chain B: R.118, F.121, Y.194, I.198, I.202, Y.254, I.258, N.307
- Ligands: PLC.17
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:F.121, B:F.121, B:F.121, B:I.198, B:I.202, B:Y.254, B:I.258
- Hydrogen bonds: B:R.118
PLC.17: 1 residues within 4Å:- Ligands: PLC.16
No protein-ligand interaction detected (PLIP)PLC.27: 10 residues within 4Å:- Chain C: R.118, F.121, Y.194, I.202, L.206, Y.254, I.258, N.307, F.315
- Ligands: PLC.28
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:F.121, C:F.121, C:F.121, C:I.202, C:L.206, C:Y.254, C:I.258
- Hydrogen bonds: C:R.118
PLC.28: 2 residues within 4Å:- Chain C: L.206
- Ligands: PLC.27
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.206
PLC.38: 8 residues within 4Å:- Chain D: R.118, F.121, Y.194, L.206, Y.254, N.307, F.315
- Ligands: PLC.39
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:F.121, D:F.121, D:F.121, D:L.206, D:Y.254
- Hydrogen bonds: D:R.118
PLC.39: 1 residues within 4Å:- Ligands: PLC.38
No protein-ligand interaction detected (PLIP)PLC.49: 11 residues within 4Å:- Chain E: R.118, F.121, Y.194, I.198, I.202, L.206, Y.254, I.258, N.307, F.315
- Ligands: PLC.50
8 PLIP interactions:8 interactions with chain E- Hydrophobic interactions: E:F.121, E:F.121, E:F.121, E:I.198, E:L.206, E:Y.254, E:I.258
- Hydrogen bonds: E:R.118
PLC.50: 1 residues within 4Å:- Ligands: PLC.49
No protein-ligand interaction detected (PLIP)- 10 x UNL: UNKNOWN LIGAND
UNL.4: 8 residues within 4Å:- Chain A: F.210, T.214, W.217
- Chain B: I.271, T.274, V.275, Y.278
- Ligands: UNL.18
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:F.210, A:T.214, A:W.217, A:W.217, B:I.271, B:T.274, B:Y.278
UNL.5: 3 residues within 4Å:- Chain A: F.267, I.271
- Ligands: UNL.52
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.267, A:I.271
UNL.18: 3 residues within 4Å:- Chain B: F.267, I.271
- Ligands: UNL.4
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.267, B:I.271
UNL.19: 8 residues within 4Å:- Chain B: F.210, T.214, W.217
- Chain C: I.271, T.274, V.275, Y.278
- Ligands: UNL.29
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:F.210, B:T.214, B:W.217, C:T.274, C:Y.278, C:Y.278
UNL.29: 3 residues within 4Å:- Chain C: F.267, I.271
- Ligands: UNL.19
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.267, C:I.271
UNL.30: 8 residues within 4Å:- Chain C: F.210, T.214, W.217
- Chain D: I.271, T.274, V.275, Y.278
- Ligands: UNL.40
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain D- Hydrophobic interactions: C:F.210, C:T.214, C:W.217, C:W.217, D:I.271, D:Y.278
UNL.40: 3 residues within 4Å:- Chain D: F.267, I.271
- Ligands: UNL.30
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:F.267, D:I.271
UNL.41: 6 residues within 4Å:- Chain D: F.210, W.213, T.214, W.217
- Chain E: V.275, Y.278
6 PLIP interactions:1 interactions with chain E, 5 interactions with chain D- Hydrophobic interactions: E:Y.278, D:F.210, D:W.213, D:T.214, D:W.217, D:W.217
UNL.51: 1 residues within 4Å:- Chain E: I.271
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:I.271
UNL.52: 8 residues within 4Å:- Chain A: I.271, T.274, V.275, Y.278
- Chain E: F.210, T.214, W.217
- Ligands: UNL.5
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain E- Hydrophobic interactions: A:I.271, A:T.274, A:Y.278, E:F.210, E:T.214, E:W.217
- 7 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 3 residues within 4Å:- Chain A: F.78, A.84, R.85
Ligand excluded by PLIPCL.7: 3 residues within 4Å:- Chain A: N.139, R.179, L.180
Ligand excluded by PLIPCL.8: 1 residues within 4Å:- Chain A: A.175
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain B: F.78, R.85
Ligand excluded by PLIPCL.31: 3 residues within 4Å:- Chain C: F.78, A.84, R.85
Ligand excluded by PLIPCL.42: 3 residues within 4Å:- Chain D: R.77, F.78, R.85
Ligand excluded by PLIPCL.53: 3 residues within 4Å:- Chain E: R.77, F.78, R.85
Ligand excluded by PLIP- 5 x NA: SODIUM ION(Non-functional Binders)
NA.9: 4 residues within 4Å:- Chain A: P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.68, A:I.73
NA.21: 5 residues within 4Å:- Chain B: V.5, P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.71, B:I.73
NA.32: 4 residues within 4Å:- Chain C: P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:I.71, C:I.73
NA.43: 5 residues within 4Å:- Chain D: V.5, P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:P.68, D:I.73
NA.54: 4 residues within 4Å:- Chain E: P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:I.71, E:I.73
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
LMT.11: 4 residues within 4Å:- Ligands: LMT.12, LMT.23, LMT.34, LMT.56
No protein-ligand interaction detected (PLIP)LMT.12: 6 residues within 4Å:- Chain A: A.237, I.240
- Chain B: T.244
- Chain E: A.237
- Ligands: LMT.11, LMT.23
3 PLIP interactions:1 interactions with chain B, 1 interactions with chain E, 1 interactions with chain A- Hydrophobic interactions: B:T.244, E:A.237, A:I.240
LMT.23: 7 residues within 4Å:- Chain A: A.237
- Chain B: I.233, A.237, L.241
- Chain C: T.244
- Ligands: LMT.11, LMT.12
5 PLIP interactions:1 interactions with chain C, 1 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: C:T.244, A:A.237, B:I.233, B:A.237, B:L.241
LMT.34: 7 residues within 4Å:- Chain B: A.237
- Chain C: I.233, A.237, I.240, L.241
- Chain D: T.244
- Ligands: LMT.11
7 PLIP interactions:5 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: C:I.233, C:A.237, C:I.240, C:I.240, C:L.241, B:A.237, D:T.244
LMT.45: 4 residues within 4Å:- Chain C: A.237
- Chain D: I.233, A.237, L.241
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:I.233, C:A.237
LMT.56: 5 residues within 4Å:- Chain D: A.237
- Chain E: I.233, A.237, I.240
- Ligands: LMT.11
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:I.233, E:A.237, E:I.240, D:A.237
- 10 x MBR: TRIBROMOMETHANE(Non-covalent)
MBR.13: 8 residues within 4Å:- Chain A: Y.119, Y.197, I.201, L.241, V.242, N.245
- Chain B: K.248
- Ligands: MBR.14
1 PLIP interactions:1 interactions with chain A- Halogen bonds: A:V.242
MBR.14: 7 residues within 4Å:- Chain A: Y.119, P.120, Y.197, I.201, I.202, T.255
- Ligands: MBR.13
1 PLIP interactions:1 interactions with chain A- Halogen bonds: A:Y.197
MBR.24: 8 residues within 4Å:- Chain B: Y.119, Y.197, I.201, L.241, V.242, N.245
- Chain C: K.248
- Ligands: MBR.25
No protein-ligand interaction detected (PLIP)MBR.25: 7 residues within 4Å:- Chain B: Y.119, P.120, Y.197, I.201, I.202, T.255
- Ligands: MBR.24
1 PLIP interactions:1 interactions with chain B- Halogen bonds: B:Y.197
MBR.35: 9 residues within 4Å:- Chain C: Y.119, Y.197, I.201, L.241, V.242, N.245
- Chain D: E.243, K.248
- Ligands: MBR.36
No protein-ligand interaction detected (PLIP)MBR.36: 8 residues within 4Å:- Chain C: Y.119, P.120, Y.197, I.201, I.202, V.242, T.255
- Ligands: MBR.35
1 PLIP interactions:1 interactions with chain C- Halogen bonds: C:Y.197
MBR.46: 8 residues within 4Å:- Chain D: Y.119, Y.197, I.201, L.241, V.242, N.245
- Chain E: K.248
- Ligands: MBR.47
No protein-ligand interaction detected (PLIP)MBR.47: 8 residues within 4Å:- Chain D: P.120, I.201, I.202, M.205, T.255, I.258, I.259
- Ligands: MBR.46
No protein-ligand interaction detected (PLIP)MBR.57: 8 residues within 4Å:- Chain A: K.248
- Chain E: Y.119, Y.197, I.201, L.241, V.242, N.245
- Ligands: MBR.58
1 PLIP interactions:1 interactions with chain E- Halogen bonds: E:V.242
MBR.58: 7 residues within 4Å:- Chain E: Y.119, P.120, Y.197, I.201, I.202, T.255
- Ligands: MBR.57
1 PLIP interactions:1 interactions with chain E- Halogen bonds: E:Y.197
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sauguet, L. et al., Structural basis for potentiation by alcohols and anaesthetics in a ligand-gated ion channel. Nat Commun (2013)
- Release Date
- 2013-04-17
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.65 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 10 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
- 10 x UNL: UNKNOWN LIGAND
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x NA: SODIUM ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
- 10 x MBR: TRIBROMOMETHANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sauguet, L. et al., Structural basis for potentiation by alcohols and anaesthetics in a ligand-gated ion channel. Nat Commun (2013)
- Release Date
- 2013-04-17
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.