SMTL ID : 4hlc.1

Sulfonylpiperidines as Novel, Antibacterial Inhibitors of Gram-Positive Thymidylate Kinase (TMK): Compound 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x T05: 4-{[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]sulfonyl}-2-(3-methylphenoxy)benzoic acid(Non-covalent)

T05.1: 11 residues within 4Å: Chain A: E.37, R.48, L.52, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.48, A:R.92, A:Y.100 Hydrogen bonds: A:R.70, A:R.70, A:Q.101, A:Q.101 Salt bridges: A:R.48 pi-Stacking: A:F.66, A:F.66 T05.2: 11 residues within 4Å: Chain B: E.37, R.48, L.52, F.66, S.69, R.70, R.92, S.96, S.97, Y.100, Q.101 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:R.48, B:R.92, B:Y.100 Hydrogen bonds: B:R.70, B:R.70, B:Q.101, B:Q.101 Salt bridges: B:R.48 pi-Stacking: B:F.66, B:F.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Botella, G. et al., Sulfonylpiperidines as novel, antibacterial inhibitors of Gram-positive thymidylate kinase (TMK). Bioorg.Med.Chem.Lett. (2013)

Release Date

2012-10-31

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

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