- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.64 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x G1P: 1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 8 x THM: THYMIDINE(Non-covalent)
THM.2: 14 residues within 4Å:- Chain A: L.6, S.7, G.8, G.9, Q.24, Q.80, P.83, D.84, G.85, L.86, L.106, G.107, D.108
- Ligands: G1P.1
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.86
- Hydrogen bonds: A:G.8, A:Q.80, A:Q.80, A:G.85, A:G.107, A:D.108, A:D.108
- Water bridges: A:G.9, A:G.9
THM.3: 12 residues within 4Å:- Chain A: L.43, Y.112, G.113, F.116, T.117, V.248, A.249, E.253, I.254, R.257
- Chain B: R.217, G.218
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:L.43
- Hydrogen bonds: A:G.113, A:G.113, A:K.247, A:A.249
- Water bridges: A:S.39, A:G.115, A:C.250
- pi-Cation interactions: B:R.217
THM.6: 12 residues within 4Å:- Chain B: L.6, G.8, G.9, Q.24, Q.80, P.83, D.84, G.85, L.86, L.106, D.108, E.194
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.86
- Hydrogen bonds: B:G.8, B:Q.80, B:Q.80, B:G.85, B:D.108
- Water bridges: B:G.9, B:G.9
THM.7: 14 residues within 4Å:- Chain A: R.217, G.218
- Chain B: L.43, Y.112, G.113, F.116, T.117, V.248, A.249, E.253, I.254, R.257, E.296, G.297
13 PLIP interactions:11 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.43, B:L.43
- Hydrogen bonds: B:G.113, B:G.113, B:K.247, B:A.249
- Water bridges: B:S.39, B:G.115, B:T.117, B:T.117, B:C.250, A:R.217
- pi-Cation interactions: A:R.217
THM.11: 14 residues within 4Å:- Chain C: L.6, S.7, G.8, G.9, Q.24, Q.80, P.83, D.84, G.85, L.86, L.106, G.107, D.108
- Ligands: G1P.10
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:L.86
- Hydrogen bonds: C:G.8, C:Q.80, C:Q.80, C:G.85, C:G.107, C:D.108, C:D.108
- Water bridges: C:G.9, C:G.9
THM.12: 12 residues within 4Å:- Chain C: L.43, Y.112, G.113, F.116, T.117, V.248, A.249, E.253, I.254, R.257
- Chain D: R.217, G.218
10 PLIP interactions:9 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:L.43
- Hydrogen bonds: C:Y.112, C:G.113, C:G.113, C:K.247, C:A.249
- Water bridges: C:S.39, C:H.114, C:C.250
- pi-Cation interactions: D:R.217
THM.15: 12 residues within 4Å:- Chain D: L.6, G.8, G.9, Q.24, Q.80, P.83, D.84, G.85, L.86, L.106, D.108, E.194
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:L.86
- Hydrogen bonds: D:G.8, D:Q.80, D:Q.80, D:G.85, D:D.108
- Water bridges: D:G.9, D:G.9
THM.16: 14 residues within 4Å:- Chain C: R.217, G.218
- Chain D: L.43, Y.112, G.113, F.116, T.117, V.248, A.249, E.253, I.254, R.257, E.296, G.297
13 PLIP interactions:2 interactions with chain C, 11 interactions with chain D- Water bridges: C:R.217, D:S.39, D:G.115, D:T.117, D:C.250
- pi-Cation interactions: C:R.217
- Hydrophobic interactions: D:L.43, D:L.43
- Hydrogen bonds: D:Y.112, D:G.113, D:G.113, D:K.247, D:A.249
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: G.66, G.67, G.68, S.69
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.67, A:G.67, A:G.68, A:S.69, A:S.69
- Water bridges: A:E.70
SO4.5: 4 residues within 4Å:- Chain A: N.125, R.126, K.127, S.128
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.127, A:S.128
- Water bridges: A:R.126, A:S.128
SO4.8: 4 residues within 4Å:- Chain B: G.66, G.67, G.68, S.69
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.67, B:G.67, B:G.68, B:S.69, B:S.69
- Water bridges: B:E.70
SO4.9: 4 residues within 4Å:- Chain B: N.125, R.126, K.127, S.128
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.125, B:R.126, B:K.127, B:S.128
SO4.13: 4 residues within 4Å:- Chain C: G.66, G.67, G.68, S.69
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:G.67, C:G.67, C:G.68, C:S.69, C:S.69
- Water bridges: C:E.70
SO4.14: 4 residues within 4Å:- Chain C: N.125, R.126, K.127, S.128
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.127, C:S.128
- Water bridges: C:R.126, C:S.128
SO4.17: 4 residues within 4Å:- Chain D: G.66, G.67, G.68, S.69
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:G.67, D:G.67, D:G.68, D:S.69, D:S.69
- Water bridges: D:E.70
SO4.18: 4 residues within 4Å:- Chain D: N.125, R.126, K.127, S.128
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.125, D:R.126, D:K.127, D:S.128
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine and glucose-1-phosphate. TO BE PUBLISHED
- Release Date
- 2013-10-23
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.64 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x G1P: 1-O-phosphono-alpha-D-glucopyranose(Non-covalent)
- 8 x THM: THYMIDINE(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with thymidine and glucose-1-phosphate. TO BE PUBLISHED
- Release Date
- 2013-10-23
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B