SMTL ID : 4ho5.1 (2 other biounits)

Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with TDP-glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x DAU: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE(Non-covalent)

DAU.1: 25 residues within 4Å: Chain A: L.6, S.7, G.8, G.9, R.13, K.23, Q.24, Q.80, P.83, D.84, G.85, L.86, L.106, G.107, D.108, N.109, F.143, G.144, E.159, K.160, V.170, G.172, E.194, T.198, W.221 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:L.86 Hydrogen bonds: A:G.8, A:R.13, A:Q.80, A:Q.80, A:G.85, A:G.107, A:D.108, A:D.108, A:N.109, A:N.109, A:G.144, A:E.159, A:V.170 Water bridges: A:G.9, A:G.9, A:R.13, A:D.108, A:Y.174 Salt bridges: A:K.23, A:K.160, A:K.160 DAU.2: 12 residues within 4Å: Chain A: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, V.248, A.249, E.253, I.254, R.257 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.43 Hydrogen bonds: A:Y.112, A:G.113, A:G.113, A:G.115, A:T.117, A:T.117, A:A.249 Water bridges: A:S.39, A:G.115, A:E.118, A:K.247, A:C.250 Salt bridges: A:H.114, A:H.114

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: S.10, G.11, T.12, R.13 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.12, A:T.12, A:R.13 Water bridges: A:S.10, A:S.10, A:T.12, A:R.13, A:K.23 Salt bridges: A:R.13, A:K.23 SO4.4: 4 residues within 4Å: Chain A: G.66, G.67, G.68, S.69 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.67, A:G.68, A:S.69 Water bridges: A:G.67, A:S.69, A:E.70, A:E.70 SO4.5: 4 residues within 4Å: Chain A: N.125, R.126, K.127, S.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.127, A:S.128 Water bridges: A:S.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with TDP-glucose. TO BE PUBLISHED

Release Date

2013-10-23

Peptides

Glucose-1-phosphate thymidylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-1-phosphate thymidylyltransferase

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