SMTL ID : 4ho6.1 (1 other biounit)

Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-glucose and UTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.1: 19 residues within 4Å: Chain A: L.6, G.8, G.9, Q.24, Q.80, P.83, D.84, G.85, L.86, L.106, D.108, F.143, G.144, E.159, K.160, V.170, R.192, T.198, W.221 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.86 Hydrogen bonds: A:G.8, A:Q.80, A:Q.80, A:G.85, A:G.144, A:E.159, A:R.192, A:E.196, A:E.196, A:T.198 Water bridges: A:G.8, A:G.9, A:G.9, A:Q.24, A:G.107, A:D.108, A:N.109, A:V.170, A:T.171, A:R.192, A:R.192, A:E.194, A:I.197, A:T.198 Salt bridges: A:K.160, A:K.160, A:R.192

1 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)

UTP.2: 12 residues within 4Å: Chain A: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, V.248, A.249, E.253, I.254, R.257 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:Y.112, A:G.113, A:G.113, A:G.115, A:F.116, A:T.117, A:T.117, A:K.247, A:A.249 Water bridges: A:S.39, A:E.118, A:C.250 Salt bridges: A:H.114, A:H.114

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: G.11, T.12, R.13 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.11, A:T.12, A:R.13 Salt bridges: A:R.13 SO4.4: 3 residues within 4Å: Chain A: G.66, G.67, S.69 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.67 Water bridges: A:G.68, A:S.69, A:E.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-glucose and UTP. TO BE PUBLISHED

Release Date

2013-10-23

Peptides

Glucose-1-phosphate thymidylyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-1-phosphate thymidylyltransferase

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