- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- 4 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
UTP.2: 12 residues within 4Å:- Chain A: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, V.248, A.249, E.253, I.254, R.257
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:Y.112, A:G.113, A:G.113, A:G.115, A:F.116, A:T.117, A:T.117, A:K.247, A:A.249
- Water bridges: A:S.39, A:E.118, A:C.250
- Salt bridges: A:H.114, A:H.114
UTP.6: 12 residues within 4Å:- Chain B: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, V.248, A.249, E.253, I.254, R.257
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:Y.112, B:G.113, B:G.113, B:G.115, B:F.116, B:T.117, B:T.117, B:K.247, B:A.249
- Water bridges: B:S.39, B:E.118, B:C.250
- Salt bridges: B:H.114, B:H.114
UTP.10: 12 residues within 4Å:- Chain C: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, V.248, A.249, E.253, I.254, R.257
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:G.113, C:G.113, C:G.115, C:F.116, C:T.117, C:T.117, C:K.247, C:A.249
- Water bridges: C:S.39, C:E.118, C:C.250
- Salt bridges: C:H.114, C:H.114
UTP.14: 12 residues within 4Å:- Chain D: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, V.248, A.249, E.253, I.254, R.257
13 PLIP interactions:13 interactions with chain D- Hydrogen bonds: D:G.113, D:G.113, D:G.115, D:F.116, D:T.117, D:T.117, D:K.247, D:A.249
- Water bridges: D:S.39, D:E.118, D:C.250
- Salt bridges: D:H.114, D:H.114
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: G.11, T.12, R.13
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.11, A:T.12, A:R.13
- Salt bridges: A:R.13
SO4.4: 6 residues within 4Å:- Chain A: G.66, G.67, S.69
- Chain D: Y.77, A.78, V.79
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:G.67, D:V.79
- Water bridges: A:L.65, A:G.68, A:S.69, A:E.70
SO4.7: 3 residues within 4Å:- Chain B: G.11, T.12, R.13
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.11, B:T.12, B:R.13
- Salt bridges: B:R.13
SO4.8: 6 residues within 4Å:- Chain B: G.66, G.67, S.69
- Chain C: Y.77, A.78, V.79
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:G.67, C:V.79
- Water bridges: B:L.65, B:G.68, B:S.69, B:E.70
SO4.11: 3 residues within 4Å:- Chain C: G.11, T.12, R.13
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:G.11, C:T.12, C:T.12, C:R.13
- Salt bridges: C:R.13
SO4.12: 6 residues within 4Å:- Chain B: Y.77, A.78, V.79
- Chain C: G.66, G.67, S.69
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:G.67, B:V.79
- Water bridges: C:L.65, C:G.68, C:S.69, C:E.70
SO4.15: 3 residues within 4Å:- Chain D: G.11, T.12, R.13
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.11, D:T.12, D:T.12, D:R.13
- Salt bridges: D:R.13
SO4.16: 6 residues within 4Å:- Chain A: Y.77, A.78, V.79
- Chain D: G.66, G.67, S.69
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:G.67, A:V.79
- Water bridges: D:L.65, D:G.68, D:S.69, D:E.70
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-glucose and UTP. TO BE PUBLISHED
- Release Date
- 2013-10-23
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)
- 4 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-glucose and UTP. TO BE PUBLISHED
- Release Date
- 2013-10-23
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A