- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
UTP.2: 16 residues within 4Å:- Chain A: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, E.118, V.248, A.249, E.253, I.254, R.257
- Chain B: G.216, R.217, G.218
16 PLIP interactions:4 interactions with chain B, 12 interactions with chain A- Hydrogen bonds: B:G.216, B:R.217, B:G.218, A:G.113, A:G.113, A:G.115, A:F.116, A:T.117, A:T.117, A:A.249
- pi-Cation interactions: B:R.217
- Water bridges: A:S.39, A:K.247, A:C.250
- Salt bridges: A:H.114, A:H.114
UTP.9: 16 residues within 4Å:- Chain A: G.216, R.217, G.218
- Chain B: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, K.247, V.248, A.249, E.253, I.254, R.257
17 PLIP interactions:5 interactions with chain A, 12 interactions with chain B- Hydrogen bonds: A:R.217, A:G.218, B:Y.112, B:G.113, B:G.113, B:G.115, B:T.117, B:T.117, B:A.249
- Water bridges: A:G.216, A:R.217, B:S.39, B:K.247, B:C.250
- pi-Cation interactions: A:R.217
- Salt bridges: B:H.114, B:H.114
UTP.15: 16 residues within 4Å:- Chain C: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, E.118, V.248, A.249, E.253, I.254, R.257
- Chain D: G.216, R.217, G.218
16 PLIP interactions:12 interactions with chain C, 4 interactions with chain D- Hydrogen bonds: C:G.113, C:G.113, C:G.115, C:F.116, C:T.117, C:T.117, C:A.249, D:G.216, D:R.217, D:G.218
- Water bridges: C:S.39, C:K.247, C:C.250
- Salt bridges: C:H.114, C:H.114
- pi-Cation interactions: D:R.217
UTP.22: 16 residues within 4Å:- Chain C: G.216, R.217, G.218
- Chain D: L.43, Y.112, G.113, H.114, G.115, F.116, T.117, K.247, V.248, A.249, E.253, I.254, R.257
16 PLIP interactions:11 interactions with chain D, 5 interactions with chain C- Hydrogen bonds: D:G.113, D:G.113, D:G.115, D:T.117, D:T.117, D:A.249, C:R.217, C:G.218
- Water bridges: D:S.39, D:K.247, D:C.250, C:G.216, C:R.217
- Salt bridges: D:H.114, D:H.114
- pi-Cation interactions: C:R.217
- 18 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: S.10, G.11, T.12, R.13
Ligand excluded by PLIPSO4.4: 5 residues within 4Å:- Chain A: G.66, G.67, G.68, S.69, E.70
Ligand excluded by PLIPSO4.5: 4 residues within 4Å:- Chain A: N.125, R.126, K.127, S.128
Ligand excluded by PLIPSO4.6: 2 residues within 4Å:- Chain A: K.153, H.211
Ligand excluded by PLIPSO4.7: 2 residues within 4Å:- Chain A: S.190, A.191
Ligand excluded by PLIPSO4.10: 3 residues within 4Å:- Chain B: G.9, S.10
- Ligands: GDU.8
Ligand excluded by PLIPSO4.11: 4 residues within 4Å:- Chain B: G.66, G.67, G.68, S.69
Ligand excluded by PLIPSO4.12: 4 residues within 4Å:- Chain B: N.125, R.126, K.127, S.128
Ligand excluded by PLIPSO4.13: 1 residues within 4Å:- Chain B: Q.265
Ligand excluded by PLIPSO4.16: 4 residues within 4Å:- Chain C: S.10, G.11, T.12, R.13
Ligand excluded by PLIPSO4.17: 5 residues within 4Å:- Chain C: G.66, G.67, G.68, S.69, E.70
Ligand excluded by PLIPSO4.18: 4 residues within 4Å:- Chain C: N.125, R.126, K.127, S.128
Ligand excluded by PLIPSO4.19: 2 residues within 4Å:- Chain C: K.153, H.211
Ligand excluded by PLIPSO4.20: 2 residues within 4Å:- Chain C: S.190, A.191
Ligand excluded by PLIPSO4.23: 3 residues within 4Å:- Chain D: G.9, S.10
- Ligands: GDU.21
Ligand excluded by PLIPSO4.24: 4 residues within 4Å:- Chain D: G.66, G.67, G.68, S.69
Ligand excluded by PLIPSO4.25: 4 residues within 4Å:- Chain D: N.125, R.126, K.127, S.128
Ligand excluded by PLIPSO4.26: 1 residues within 4Å:- Chain D: Q.265
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-galactose and UTP. TO BE PUBLISHED
- Release Date
- 2013-10-23
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GDU: GALACTOSE-URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x UTP: URIDINE 5'-TRIPHOSPHATE(Non-covalent)
- 18 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, T.J. et al., Crystal structure of glucose 1-phosphate thymidylyltransferase from Aneurinibacillus thermoaerophilus complexed with UDP-galactose and UTP. TO BE PUBLISHED
- Release Date
- 2013-10-23
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B