SMTL ID : 4hoa.1

Crystal structure of the complex of type 1 ribosome inactivating protein from Momordica Balsamina with B-D-galactopyranosyl-(1-4)-D-glucose at 2.0 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: T.226, N.227 No protein-ligand interaction detected (PLIP)

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.2: 7 residues within 4Å: Chain A: Y.70, I.71, E.85, G.109, N.110, Y.111, I.155 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.85, A:S.108, A:I.71, A:E.85, A:Y.111 Water bridges: A:R.163, A:R.163, A:R.163, A:R.163

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.6, A.9, L.129, P.130, A.175, Y.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.9 Water bridges: A:A.9, A:A.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of the complex of type 1 ribosome inactivating protein from Momordica Balsamina with B-D-galactopyranosyl-(1-4)-D-glucose at 2.0 A resolution. To be Published

Release Date

2012-11-07

Peptides

rRNA N-glycosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N-glycosidase

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