SMTL ID : 4hr2.1 (2 other biounits)

Structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis bound to ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 10 residues within 4Å: Chain A: K.15, H.58, F.63, L.67, R.91, T.97, R.108, I.115, D.116, N.118 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.15, A:T.97, A:N.118, A:N.118 Water bridges: A:R.91, A:R.91, A:T.97, A:R.108, A:R.108, A:N.118, A:G.122, A:D.124 Salt bridges: A:H.58, A:R.91, A:R.108 pi-Stacking: A:F.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clifton, M.C. et al., Structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis bound to ADP. To be Published

Release Date

2012-11-07

Peptides

Nucleoside diphosphate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleoside diphosphate kinase

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