SMTL ID : 4huv.1 (1 other biounit)

Crystal Structure of H2Db-NPM6W

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- SER- ASN- GLU- ASN- TRP- GLU- THR- MET: NPM6W variant peptide(Non-covalent)

ALA-SER-ASN-GLU-ASN-TRP-GLU-THR-MET.1: 26 residues within 4Å: Chain A: M.6, Y.8, Y.46, Y.60, E.64, K.67, Q.71, W.74, V.77, S.78, N.81, Y.85, L.96, Q.98, F.117, Y.124, T.144, K.147, W.148, S.151, A.153, H.156, Y.157, Y.160, W.168, Y.172 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:W.74, A:V.77, A:K.147, A:Y.160, A:W.168 Hydrogen bonds: A:Y.46, A:E.64, A:K.67, A:Q.71, A:Q.71, A:S.78, A:N.81, A:Y.85, A:Q.98, A:Q.98, A:T.144, A:K.147, A:H.156, A:Y.157, A:Y.157, A:Y.160, A:Y.172 Water bridges: A:S.100, A:W.148, A:Y.157 Salt bridges: A:K.147, A:K.147

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.112, Y.114 Chain B: K.58 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Salt bridges: B:K.58, A:R.112 Hydrogen bonds: A:Y.114 Water bridges: A:R.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valkenburg, S.A. et al., Preemptive priming readily overcomes structure-based mechanisms of virus escape. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-02-27

Peptides

H-2 class I histocompatibility antigen, D-B alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, D-B alpha chain

Beta-2-microglobulin

Related Entries With Identical Sequence